RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MOCS3O95396 460 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 SRPRAP08240 638 aaKnown RBP14.36□□□□□ -0.11
VPS29-201ENST00000360579 SETSIPP0DME0 302 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 C5AR1P21730 350 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 ACP1P24666 158 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 MXI1P50539 228 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 ADPRHP54922 357 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 UCNP55089 124 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 CXADRP78310 365 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 CCDC173Q0VFZ6 552 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 OVGP1Q12889 678 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 TAF1BQ53T94 588 aaPredicted RBP14.36□□□□□ -0.11
VPS29-201ENST00000360579 SGO2Q562F6 1265 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 FAM133BQ5BKY9 247 aaKnown RBP14.36□□□□□ -0.11
VPS29-201ENST00000360579 C9orf64Q5T6V5 341 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 NAPEPLDQ6IQ20 393 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 MSANTD2Q6P1R3 559 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 RFWD3Q6PCD5 774 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 IQCHQ86VS3 1027 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 SPACA3Q8IXA5 215 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 MFSD2AQ8NA29 543 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 ZNF248Q8NDW4 579 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 OR14C36Q8NHC7 312 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 KCTD13Q8WZ19 329 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 TATDN2Q93075 761 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 LMLNQ96KR4 655 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 MRGPRX3Q96LB0 322 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 LGMNQ99538 433 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 RAB20Q9NX57 234 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 USP25Q9UHP3 1055 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 MGAQ8IWI9 3026 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 ATMQ13315 3056 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 TULP2O00295 520 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 LATO43561 262 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 IGLV3-27P01718 113 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 MCCD1P59942 119 aaPredicted RBP14.35□□□□□ -0.11
VPS29-201ENST00000360579 YWHAEP62258 255 aaKnown RBP14.35□□□□□ -0.11
VPS29-201ENST00000360579 RHDQ02161 417 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 BNIP3Q12983 259 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 ADAM9Q13443 819 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 CDH18Q13634 790 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 HS1BP3Q53T59 392 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 BROXQ5VW32 411 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 RNF219Q5W0B1 726 aaPredicted RBP14.35□□□□□ -0.11
VPS29-201ENST00000360579 ATL3Q6DD88 541 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 PRPF39Q86UA1 669 aaKnown RBP14.35□□□□□ -0.11
VPS29-201ENST00000360579 ERICH1Q86X53 443 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 IRGQQ8WZA9 623 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 SEMA4DQ92854 862 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 ZNF578Q96N58 590 aaPredicted RBP14.35□□□□□ -0.11
VPS29-201ENST00000360579 KDM4CQ9H3R0 1056 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 STIM2Q9P246 746 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 KIAA1257Q9ULG3 409 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 ERVW-1Q9UQF0 538 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 CEP83Q9Y592 693 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 ITIH6Q6UXX5 1313 aa14.35□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3DA0A087WVF3 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3IA0A087WXS9 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3EA0A087X179 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3KA0A087X1G2 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 GOLGA6L7A0A1B0GV03 622 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3FA6NER0 549 aaPredicted RBP14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3LB9A6J9 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 WNT9AO14904 365 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3HP0C7X1 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 CD19P15391 556 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 SLC6A4P31645 630 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 PSMD8P48556 350 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBX4P57082 545 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 PCBP4P57723 403 aaKnown RBP14.34□□□□□ -0.11
VPS29-201ENST00000360579 TMPRSS3P57727 454 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 DAOAP59103 153 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 ECT2LQ008S8 904 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 INSM1Q01101 510 aaPredicted RBP14.34□□□□□ -0.11
VPS29-201ENST00000360579 KCNH2Q12809 1159 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 ELAVL3Q14576 367 aaKnown RBP14.34□□□□□ -0.11
VPS29-201ENST00000360579 PITRM1Q5JRX3 1037 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3GQ6DHY5 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3CQ6IPX1 549 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 KANSL1Q7Z3B3 1105 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D3Q8IZP1 549 aaPredicted RBP14.34□□□□□ -0.11
VPS29-201ENST00000360579 LSMEM2Q8N112 164 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 CARNMT1Q8N4J0 409 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 AADATQ8N5Z0 425 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 RNF25Q96BH1 459 aaPredicted RBP14.34□□□□□ -0.11
VPS29-201ENST00000360579 INTS6Q9UL03 887 aaKnown RBP14.34□□□□□ -0.11
VPS29-201ENST00000360579 CFAP45Q9UL16 551 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 DMTF1Q9Y222 760 aa14.34□□□□□ -0.11
VPS29-201ENST00000360579 PLXNA2O75051 1894 aa14.33□□□□□ -0.11
VPS29-201ENST00000360579 TTC34A8MYJ7 566 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 SLC7A4O43246 635 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 MT-CO3P00414 261 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 IL1BP01584 269 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 VDRP11473 427 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 LCP1P13796 627 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 NNMTP40261 264 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 ZNF211Q13398 564 aaPredicted RBP14.33□□□□□ -0.12
VPS29-201ENST00000360579 STAT4Q14765 748 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 PROX2Q3B8N5 592 aa14.33□□□□□ -0.12
VPS29-201ENST00000360579 GUF1Q8N442 669 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms