RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 TPD52L2O43399 206 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 DAB1O75553 588 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 ANXA9O76027 345 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 FAM107AO95990 144 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 ARCN1P48444 511 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 LHX1P48742 406 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 AP3M2P53677 418 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 PKNOX1P55347 436 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 C16orf62Q7Z3J2 963 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF571Q7Z3V5 609 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 SLC13A5Q86YT5 568 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 TDRD5Q8NAT2 981 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 AGBL3Q8NEM8 1001 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 WDR36Q8NI36 951 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 SCN3BQ9NY72 215 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 SH3D21A4FU49 640 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 CCDC151A5D8V7 595 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 FDX1P10109 184 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 CYP11B1P15538 503 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 CBLP22681 906 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 MDH1P40925 334 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 BCAT1P54687 386 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 MPP3Q13368 585 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 MED21Q13503 144 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 PTK6Q13882 451 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 STAT4Q14765 748 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 NR1I3Q14994 352 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 KCNA10Q16322 511 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 ARL14EPQ8N8R7 260 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 RDH11Q8TC12 318 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 NEK7Q8TDX7 302 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 FAM198AQ9UFP1 575 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 KLHL20Q9Y2M5 609 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 CDHR2Q9BYE9 1310 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 AATKQ6ZMQ8 1374 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 FAM187AA6NFU0 413 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 YAP1P46937 504 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 STXBP1P61764 594 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 ITGA7Q13683 1181 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 KLHL12Q53G59 568 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF484Q5JVG2 852 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 TMEM63BQ5T3F8 832 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 APTXQ7Z2E3 356 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 UNC45BQ8IWX7 931 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 RNF168Q8IYW5 571 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 TC2NQ8N9U0 490 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 TPCN2Q8NHX9 752 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 ZCCHC10Q8TBK6 192 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 PRPF18Q99633 342 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 SYT17Q9BSW7 474 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 WWP1Q9H0M0 922 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 SNX6Q9UNH7 406 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 KANSL1LA0AUZ9 987 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 LRRIQ3A6PVS8 624 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 SLC1A1P43005 524 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 DDR1Q08345 913 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 NRF1Q16656 503 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 TRAF7Q6Q0C0 670 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 CTU1Q7Z7A3 348 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 CCDC185Q8N715 623 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 CARD9Q9H257 536 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 TAS2R14Q9NYV8 317 aa7.5□□□□□ -1.21
VPS13A-202ENST00000357409 NOP53Q9NZM5 478 aaKnown RBP7.5□□□□□ -1.21
VPS13A-202ENST00000357409 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 GLRA3O75311 464 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PDE5AO76074 875 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 MSX1P28360 303 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CPSF6Q16630 551 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ATP6AP1LQ52LC2 224 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CASP10Q92851 521 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ATP6V1G3Q96LB4 118 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PPP1R10Q96QC0 940 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 DNPEPQ9ULA0 475 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 BTBD19C9JJ37 291 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ALBP02768 609 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ITIH2P19823 946 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 CCNG2Q16589 344 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 UBE2Q2Q8WVN8 375 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 TCF25Q9BQ70 676 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 MRPL45Q9BRJ2 306 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 MLPHQ9BV36 600 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ADGRE3Q9BY15 652 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 EIF2AQ9BY44 585 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PORCNQ9H237 461 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ABHD16BQ9H3Z7 469 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 GPN3Q9UHW5 284 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 SH3BGRL2Q9UJC5 107 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 NELFEP18615 380 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 NCKAP1LP55160 1127 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 PTPN11Q06124 597 aaPredicted RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 MFSD7Q6UXD7 560 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 FAM151BQ6UXP7 276 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF720Q7Z2F6 126 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 DNAJB14Q8TBM8 379 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ZDHHC15Q96MV8 337 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 RANBP17Q9H2T7 1088 aaKnown RBP7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ALG2Q9H553 416 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 NRDE2Q9H7Z3 1164 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 ARL15Q9NXU5 204 aa7.49□□□□□ -1.21
VPS13A-202ENST00000357409 WBP11Q9Y2W2 641 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms