RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 FOXN3O00409 490 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 YKT6O15498 198 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 PCDHGA12O60330 932 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 DKK1O94907 266 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 MOCS3O95396 460 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 SEMA4FO95754 770 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 CAPNS1P04632 268 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 PNMA6AP0CW24 399 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 TACR2P21452 398 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 CD27P26842 260 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 CSKP41240 450 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 NUMBP49757 651 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 SNX16P57768 344 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 HLA-BQ31612 363 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 MS4A13Q5J8X5 152 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 EFHC1Q5JVL4 640 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 RNF219Q5W0B1 726 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 ZNF776Q68DI1 518 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 MMS22LQ6ZRQ5 1243 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 C11orf57Q6ZUT1 292 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 TMPRSS7Q7RTY8 843 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 SLC47A2Q86VL8 602 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 DEFB106AQ8N104 65 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 OR2I1PQ8NGU4 316 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 BAHD1Q8TBE0 780 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 SETD7Q8WTS6 366 aaKnown RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 SLC39A13Q96H72 371 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 BTN2A3PQ96KV6 586 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 PRICKLE1Q96MT3 831 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 PPP1R9BQ96SB3 815 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 CPXM1Q96SM3 734 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 TUBGCP2Q9BSJ2 902 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 DDIT4Q9NX09 232 aa12.84□□□□□ -0.35
SGCA-202ENST00000344627 EIF2B4Q9UI10 523 aaKnown RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 XPO7Q9UIA9 1087 aaKnown RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 AJAP1Q9UKB5 411 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.84□□□□□ -0.35
SGCA-202ENST00000344627 CHD6Q8TD26 2715 aa12.83□□□□□ -0.35
SGCA-202ENST00000344627 CACNA1EQ15878 2313 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 KNL1Q8NG31 2342 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 FAM170AA1A519 330 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 TARSL2A2RTX5 802 aaKnown RBP12.83□□□□□ -0.36
SGCA-202ENST00000344627 TNFSF14O43557 240 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 LUC7L3O95232 432 aaKnown RBP12.83□□□□□ -0.36
SGCA-202ENST00000344627 SRPRAP08240 638 aaKnown RBP12.83□□□□□ -0.36
SGCA-202ENST00000344627 ABCB4P21439 1286 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 CCT8P50990 548 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 OXCT1P55809 520 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 BPIFB4P59827 614 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 RNASE9P60153 205 aaKnown RBP12.83□□□□□ -0.36
SGCA-202ENST00000344627 FAM193AP78312 1265 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 PITX1P78337 314 aaPredicted RBP12.83□□□□□ -0.36
SGCA-202ENST00000344627 NME3Q13232 169 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 SLC12A1Q13621 1099 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 KCNJ12Q14500 433 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 PTPRNQ16849 979 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 FSCBQ5H9T9 825 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 FAM183BPQ6ZVS7 135 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 WDTC1Q8N5D0 677 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 C1orf131Q8NDD1 294 aaKnown RBP12.83□□□□□ -0.36
SGCA-202ENST00000344627 RHBDD1Q8TEB9 315 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 TTC17Q96AE7 1141 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 MTG2Q9H4K7 406 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 SIX2Q9NPC8 291 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 PLCB1Q9NQ66 1216 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 PRSS16Q9NQE7 514 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 TMEM51Q9NW97 253 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.83□□□□□ -0.36
SGCA-202ENST00000344627 PCDHGC3Q9UN70 934 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 LHX6Q9UPM6 363 aa12.83□□□□□ -0.36
SGCA-202ENST00000344627 FAM208BQ5VWN6 2430 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 FRYQ5TBA9 3013 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 FAM47DPA6NHR8 397 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 HSF2BPO75031 334 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 GLI1P08151 1106 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 SLC2A3P11169 496 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 ERCC5P28715 1186 aaPredicted RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 CCR1P32246 355 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 CLCN1P35523 988 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 NUDT1P36639 197 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 RPS14P62263 151 aaKnown RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 RACK1P63244 317 aaKnown RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 SCAPQ12770 1279 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 DRAP1Q14919 205 aaPredicted RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 PITRM1Q5JRX3 1037 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 TAF3Q5VWG9 929 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 CIR1Q86X95 450 aaPredicted RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 DHX40Q8IX18 779 aaKnown RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 CAMK1GQ96NX5 476 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 RSPH9Q9H1X1 276 aaPredicted RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 SCUBE2Q9NQ36 999 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 SAMSN1Q9NSI8 373 aaKnown RBP12.82□□□□□ -0.36
SGCA-202ENST00000344627 FZD4Q9ULV1 537 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 ERVW-1Q9UQF0 538 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 ANKRD6Q9Y2G4 727 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 PCDHGA1Q9Y5H4 931 aa12.82□□□□□ -0.36
SGCA-202ENST00000344627 LRRC72A6NJI9 287 aa12.81□□□□□ -0.36
SGCA-202ENST00000344627 KCNU1A8MYU2 1149 aa12.81□□□□□ -0.36
SGCA-202ENST00000344627 VILLO15195 856 aa12.81□□□□□ -0.36
SGCA-202ENST00000344627 SIN3BO75182 1162 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms