RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SKA2Q8WVK7 121 aaPredicted RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 ZNF778Q96MU6 729 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 PHF12Q96QT6 1004 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 NIFKQ9BYG3 293 aaKnown RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 C20orf27Q9GZN8 174 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TKTL2Q9H0I9 626 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TMEM165Q9HC07 324 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 ETAA1Q9NY74 926 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 CAPN8A6NHC0 703 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 ZBTB24O43167 697 aaPredicted RBP12.21□□□□□ -0.45
USP1-201ENST00000339950 TREHO43280 583 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 B4GALT4O60513 344 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 SUPT7LO94864 414 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 SPRP35270 261 aaPredicted RBP12.21□□□□□ -0.45
USP1-201ENST00000339950 CHRNA4P43681 627 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 BRCC3P46736 316 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 PSEN1P49768 467 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 BST2Q10589 180 aaKnown RBP12.21□□□□□ -0.45
USP1-201ENST00000339950 PDK1Q15118 436 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 FUT11Q495W5 492 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 PACS1Q6VY07 963 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 GDPD5Q8WTR4 605 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 PDLIM7Q9NR12 457 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 SLC7A8Q9UHI5 535 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 SSX2IPQ9Y2D8 614 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 C3orf70A6NLC5 250 aaPredicted RBP12.21□□□□□ -0.45
USP1-201ENST00000339950 MDM4O15151 490 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 BEST1O76090 585 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 ALADP13716 330 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 ARSAP15289 507 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 SP100P23497 879 aaPredicted RBP12.21□□□□□ -0.45
USP1-201ENST00000339950 PMLP29590 882 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 BCAT1P54687 386 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 EFHC1Q5JVL4 640 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 WASHC2DQ5SRD0 308 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 C9orf131Q5VYM1 1079 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 KRT80Q6KB66 452 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 TSHZ1Q6ZSZ6 1077 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 DENND6AQ8IWF6 608 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 PLD6Q8N2A8 252 aaKnown RBP12.21□□□□□ -0.45
USP1-201ENST00000339950 CMASQ8NFW8 434 aaPredicted RBP12.21□□□□□ -0.45
USP1-201ENST00000339950 KLHL5Q96PQ7 755 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 CYP2S1Q96SQ9 504 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 SOX13Q9UN79 622 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 ATP8B3O60423 1300 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 ADGRA2Q96PE1 1338 aa12.21□□□□□ -0.45
USP1-201ENST00000339950 NUP205Q92621 2012 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 MAGEB2O15479 319 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 NOL3O60936 208 aaKnown RBP12.21□□□□□ -0.46
USP1-201ENST00000339950 MT-ND1P03886 318 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 ANPEPP15144 967 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 SCNN1GP51170 649 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 ACAD11Q709F0 780 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 BLOC1S5Q8TDH9 187 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 SNX15Q9NRS6 342 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 THAP1Q9NVV9 213 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 THEGQ9P2T0 379 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 ARHGAP26Q9UNA1 814 aa12.21□□□□□ -0.46
USP1-201ENST00000339950 HBS1LQ9Y450 684 aaKnown RBP12.21□□□□□ -0.46
USP1-201ENST00000339950 PGK1P00558 417 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 BPGMP07738 259 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 MCF2P10911 925 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 BTBD8Q5XKL5 378 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ASRGL1Q7L266 308 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 KCNMB4Q86W47 210 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 EFHBQ8N7U6 833 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 CDC26Q8NHZ8 85 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 NPAS2Q99743 824 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 SYNPO2Q9UMS6 1093 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 MYBPHLA2RUH7 354 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 FAM72CH0Y354 149 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 TSPAN1O60635 241 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 LTFP02788 710 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 CCNB1P14635 433 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 PEX2P28328 305 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 AFF1P51825 1210 aaKnown RBP12.2□□□□□ -0.46
USP1-201ENST00000339950 DSG1Q02413 1049 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 TSTA3Q13630 321 aaPredicted RBP12.2□□□□□ -0.46
USP1-201ENST00000339950 BLMHQ13867 455 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 FAM72AQ5TYM5 149 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ZNF470Q6ECI4 717 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 FAM72DQ6L9T8 149 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 CXCL17Q6UXB2 119 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 FAM72BQ86X60 149 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 EME1Q96AY2 570 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 EXOC2Q96KP1 924 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ZNF184Q99676 751 aaPredicted RBP12.2□□□□□ -0.46
USP1-201ENST00000339950 CAAP1Q9H8G2 361 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 POPDC2Q9HBU9 364 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 TCF7L2Q9NQB0 619 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 DSEQ9UL01 958 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 TEX264Q9Y6I9 313 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 YJEFN3A6XGL0 299 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 E7ENQ6 273 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 XPOTO43592 962 aaKnown RBP12.2□□□□□ -0.46
USP1-201ENST00000339950 GLRA3O75311 464 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 C2P06681 752 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 HDCP19113 662 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 ATP6V1C1P21283 382 aa12.2□□□□□ -0.46
USP1-201ENST00000339950 MPP1Q00013 466 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms