RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 SH3RF3Q8TEJ3 882 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 PHF12Q96QT6 1004 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 JPH1Q9HDC5 661 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 ZNF221Q9UK13 617 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ITIH1P19827 911 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 YY1P25490 414 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 SEPHS1P49903 392 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ROR2Q01974 943 aaKnown RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 PLD1Q13393 1074 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 PTAR1Q7Z6K3 402 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 ACTRT2Q8TDY3 377 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 SLITRK1Q96PX8 696 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 MGAT5Q09328 741 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ZNF177Q13360 481 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 CACUL1Q86Y37 369 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 CCDC54Q8NEL0 328 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 OR2L5Q8NG80 312 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 COL26A1Q96A83 441 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 C11orf24Q96F05 449 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 RIOK2Q9BVS4 552 aaKnown RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 PIM2Q9P1W9 311 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 RSL24D1Q9UHA3 163 aaKnown RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 SHOC2Q9UQ13 582 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 TIMM8BQ9Y5J9 83 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 ZSCAN5CA6NGD5 496 aaPredicted RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 APOL3O95236 402 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 RPL10AP62906 217 aaKnown RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 RIPK1Q13546 671 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 NAT14Q8WUY8 206 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 SLC38A2Q96QD8 506 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 ZSCAN5AQ9BUG6 496 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TPK1Q9H3S4 243 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 NKIRAS2Q9NYR9 191 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 DHRS7Q9Y394 339 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TRIM64A6NGJ6 449 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TP73O15350 636 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 MAGEB3O15480 346 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 FARP2O94887 1054 aaPredicted RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 FXR1P51114 621 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP47-202ENST00000339865 IST1P53990 364 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TUBA3CQ13748 450 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 HMBOX1Q6NT76 420 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 Q96MT0 163 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 SP140LQ9H930 580 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 FEM1BQ9UK73 627 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 STARD13Q9Y3M8 1113 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 KNL1Q8NG31 2342 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 GLP2RO95838 553 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 PRKCBP05771 671 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TTKP33981 857 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 GRIA3P42263 894 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 PLK1P53350 603 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 ARHGAP36Q6ZRI8 547 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TPCN2Q8NHX9 752 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TMEM143Q96AN5 459 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TRIT1Q9H3H1 467 aaKnown RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 UBP1Q9NZI7 540 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 UBQLN1Q9UMX0 589 aaKnown RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 SSU72P8A0A1W2PR75 194 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 METTL18O95568 372 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 C9P02748 559 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 RBP1P09455 135 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 CNTFP26441 200 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 SRSF11Q05519 484 aaKnown RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 OSBPL3Q9H4L5 887 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TMBIM4Q9HC24 238 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 CARD8Q9Y2G2 431 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 GMPPBQ9Y5P6 360 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 CDHR2Q9BYE9 1310 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 ZBTB11O95625 1053 aaPredicted RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 FSHRP23945 695 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 MPP3Q13368 585 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 RAPSNQ13702 412 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 SCAIQ8N9R8 606 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 CHCHD6Q9BRQ6 235 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TMEM121Q9BTD3 319 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 SDK1Q7Z5N4 2213 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 M0QYT0 321 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 SLC25A12O75746 678 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 MNDAP41218 407 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 OR1G1P47890 313 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 ALDH5A1P51649 535 aaPredicted RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 PSME3P61289 254 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 VPS72Q15906 364 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 SAMD4BQ5PRF9 694 aaKnown RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 CIAPIN1Q6FI81 312 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 FRMD8Q9BZ67 464 aaPredicted RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 NEK6Q9HC98 313 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 KCNQ3O43525 872 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 AP2S1P53680 142 aaPredicted RBP13.06□□□□□ -0.32
USP47-202ENST00000339865 PRKAG1P54619 331 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 POU6F1Q14863 301 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 CBWD3Q5JTY5 395 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 CBWD5Q5RIA9 395 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 TTC7BQ86TV6 843 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 PAFAH2Q99487 392 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 ADGRE3Q9BY15 652 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 UCKL1Q9NWZ5 548 aa13.06□□□□□ -0.32
USP47-202ENST00000339865 VANGL2Q9ULK5 521 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms