RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 RHBDL2Q9NX52 303 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM220BPB1ANY3 271 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 FSCN2O14926 492 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 CEP78Q5JTW2 689 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM92BQ6ZTR7 304 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 NOP9Q86U38 636 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 CHSY1Q86X52 802 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 PRELID2Q8N945 189 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 AGAP11Q8TF27 550 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 AP3S1Q92572 193 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 SLCO2A1Q92959 643 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ABHD8Q96I13 439 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF862O60290 1169 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 MAGEA10P43363 369 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 SPATS1Q496A3 300 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 TXNDC11Q6PKC3 985 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 TMEM26Q6ZUK4 368 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ELOVL4Q9GZR5 314 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 COL6A2P12110 1019 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ALDH1A3P47895 512 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 LIPMQ5VYY2 423 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 PPP4R4Q6NUP7 873 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 AMER2Q8N7J2 671 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF512Q96ME7 567 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ST6GALNAC4Q9H4F1 302 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 C3orf18Q9UK00 162 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ZBTB12Q9Y330 459 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 DGKIO75912 1065 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 SERPINH1P50454 418 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 OLR1P78380 273 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ZCCHC7Q8N3Z6 543 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 KBTBD8Q8NFY9 601 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ATXN10Q9UBB4 475 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 OCM2P0CE71 109 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 OCMP0CE72 109 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 CHRM3P20309 590 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 NUMA1Q14980 2115 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM187BQ17R55 369 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 INO80DQ53TQ3 878 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 ARMC4Q5T2S8 1044 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 LYPLAL1Q5VWZ2 237 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 CLK4Q9HAZ1 481 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 C2CD2Q9Y426 696 aa10.49□□□□□ -0.73
CCDC88A-202ENST00000336838 SHMT1P34896 483 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ZRANB3Q5FWF4 1079 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ADGRA1Q86SQ6 560 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 C8orf59Q8N0T1 100 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 SYTL5Q8TDW5 730 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 TBL1YQ9BQ87 522 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 VTA1Q9NP79 307 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 RAP2CQ9Y3L5 183 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 MFHAS1Q9Y4C4 1052 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM86B1E9PN63 330 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 KPNA5O15131 536 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM86B2P0C5J1 330 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 CCNA2P20248 432 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF177Q13360 481 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 PSMD5Q16401 504 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 DRICH1Q6PGQ1 229 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 FBXO39Q8N4B4 442 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 HSFY1Q96LI6 401 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ZCCHC2Q9C0B9 1178 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 CYLDQ9NQC7 956 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 C17orf102A2RUQ5 167 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ITPK1Q13572 414 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 MYDGFQ969H8 173 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ELOVL6Q9H5J4 265 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 RGS18Q9NS28 235 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 KANSL3Q9P2N6 904 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 CRNNQ9UBG3 495 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ETS1P14921 441 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 CLCN5P51795 746 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 SFRP1Q8N474 314 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ADCY4Q8NFM4 1077 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 FAM81AQ8TBF8 368 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 MFSD14AQ96MC6 490 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 IARS2Q9NSE4 1012 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 TSPAN16Q9UKR8 245 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 IRGMA1A4Y4 181 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 IMPDH2P12268 514 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 JAK1P23458 1154 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ADRA1DP25100 572 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 IL12AP29459 219 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 PSEN1P49768 467 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 RPS6KA3P51812 740 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 PCSK7Q16549 785 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 CCDC142Q17RM4 750 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 MFSD7Q6UXD7 560 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 IRF2BP2Q7Z5L9 587 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ANKRD13AQ8IZ07 590 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 SEPT8Q92599 483 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 KLHL25Q9H0H3 589 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ADPRHL2Q9NX46 363 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 MYPNQ86TC9 1320 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 PMPCBO75439 489 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 TPSB2P20231 275 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 CDK18Q07002 472 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 TPSAB1Q15661 275 aa10.48□□□□□ -0.73
CCDC88A-202ENST00000336838 ARHGEF19Q8IW93 802 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms