RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 ANO4Q32M45 955 aa17■□□□□ 0.31
SHOX-201ENST00000334060 DDI1Q8WTU0 396 aa17■□□□□ 0.31
SHOX-201ENST00000334060 ELSPBP1Q96BH3 223 aa17■□□□□ 0.31
SHOX-201ENST00000334060 TBC1D31Q96DN5 1066 aa17■□□□□ 0.31
SHOX-201ENST00000334060 CALR3Q96L12 384 aaKnown RBP17■□□□□ 0.31
SHOX-201ENST00000334060 C1orf74Q96LT6 269 aa17■□□□□ 0.31
SHOX-201ENST00000334060 SPHK2Q9NRA0 654 aa17■□□□□ 0.31
SHOX-201ENST00000334060 DDX56Q9NY93 547 aaKnown RBP17■□□□□ 0.31
SHOX-201ENST00000334060 TICRRQ7Z2Z1 1910 aa17■□□□□ 0.31
SHOX-201ENST00000334060 NYNRINQ9P2P1 1898 aaKnown RBP16.99■□□□□ 0.31
SHOX-201ENST00000334060 PSMC3P17980 439 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 TFDP3Q5H9I0 405 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 CXorf57Q6NSI4 855 aaKnown RBP16.99■□□□□ 0.31
SHOX-201ENST00000334060 PRUNE1Q86TP1 453 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 ARHGAP12Q8IWW6 846 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 RCOR2Q8IZ40 523 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 CARNMT1Q8N4J0 409 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 SLC44A3Q8N4M1 653 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 IRF7Q92985 503 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 ZNF670Q9BS34 389 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 CARD9Q9H257 536 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 FBRSL1Q9HCM7 1045 aaKnown RBP16.99■□□□□ 0.31
SHOX-201ENST00000334060 ZDHHC4Q9NPG8 344 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 THEGQ9P2T0 379 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 SLC12A6Q9UHW9 1150 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 LCMT1Q9UIC8 334 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.99■□□□□ 0.31
SHOX-201ENST00000334060 SAR1BQ9Y6B6 198 aa16.99■□□□□ 0.31
SHOX-201ENST00000334060 SOBPA7XYQ1 873 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 MZF1P28698 734 aaPredicted RBP16.98■□□□□ 0.31
SHOX-201ENST00000334060 CD70P32970 193 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 ACVRL1P37023 503 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 ZP2Q05996 745 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 SLC13A5Q86YT5 568 aaPredicted RBP16.98■□□□□ 0.31
SHOX-201ENST00000334060 OR7D4Q8NG98 312 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 C1orf54Q8WWF1 131 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 TMA16Q96EY4 203 aaKnown RBP16.98■□□□□ 0.31
SHOX-201ENST00000334060 ZNF419Q96HQ0 510 aaPredicted RBP16.98■□□□□ 0.31
SHOX-201ENST00000334060 EPAS1Q99814 870 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 BBS2Q9BXC9 721 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 KIF9Q9HAQ2 790 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 HEY1Q9Y5J3 304 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 ECI2O75521 394 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 TYRP14679 529 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 ARL4AP40617 200 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 AIF1P55008 147 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 PDK2Q15119 407 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 C5orf22Q49AR2 442 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 SLC9A4Q6AI14 798 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 DDX42Q86XP3 938 aaKnown RBP eCLIP16.98■□□□□ 0.31
SHOX-201ENST00000334060 AZIN2Q96A70 460 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 DCLK3Q9C098 648 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 ZYG11BQ9C0D3 744 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 ECT2Q9H8V3 914 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 COL4A2P08572 1712 aa16.98■□□□□ 0.31
SHOX-201ENST00000334060 LOC730098B7Z3J9 87 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 H3BRJ5 948 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 DAPK3O43293 454 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 BMP1P13497 986 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 IFNAR2P48551 515 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 NRG1Q02297 640 aaPredicted RBP16.97■□□□□ 0.31
SHOX-201ENST00000334060 TXNDC11Q6PKC3 985 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 PSTKQ8IV42 348 aaKnown RBP16.97■□□□□ 0.31
SHOX-201ENST00000334060 APCDD1Q8J025 514 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 KRT222Q8N1A0 295 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 RASGEF1CQ8N431 466 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 CPXM2Q8N436 756 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 RBM41Q96IZ5 413 aaKnown RBP16.97■□□□□ 0.31
SHOX-201ENST00000334060 TRMT61BQ9BVS5 477 aaKnown RBP16.97■□□□□ 0.31
SHOX-201ENST00000334060 SLC39A8Q9C0K1 460 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 DTLQ9NZJ0 730 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 INTS6Q9UL03 887 aaKnown RBP16.97■□□□□ 0.31
SHOX-201ENST00000334060 USP34Q70CQ2 3546 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 SHISA7A6NL88 538 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 PENKP01210 267 aaPredicted RBP16.97■□□□□ 0.31
SHOX-201ENST00000334060 HLA-FP30511 346 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 SNX1Q13596 522 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 TMEM215Q68D42 235 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 RTL3Q8N8U3 475 aaKnown RBP16.97■□□□□ 0.31
SHOX-201ENST00000334060 HEBP1Q9NRV9 189 aa16.97■□□□□ 0.31
SHOX-201ENST00000334060 KCNJ1P48048 391 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 OTUD4Q01804 1114 aaKnown RBP16.96■□□□□ 0.31
SHOX-201ENST00000334060 LONRF2Q1L5Z9 754 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 ODF2Q5BJF6 829 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 SEL1L2Q5TEA6 688 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 ZC3H18Q86VM9 953 aaKnown RBP16.96■□□□□ 0.31
SHOX-201ENST00000334060 ACTL9Q8TC94 416 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 SORCS1Q8WY21 1168 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 ERLEC1Q96DZ1 483 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 HMCESQ96FZ2 354 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 LGMNQ99538 433 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 NCAPGQ9BPX3 1015 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 CEP41Q9BYV8 373 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 TMEM248Q9NWD8 314 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 OBP2AQ9NY56 170 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 PPARGC1AQ9UBK2 798 aaKnown RBP16.96■□□□□ 0.31
SHOX-201ENST00000334060 ZMYM5Q9UJ78 669 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 MIA3Q5JRA6 1907 aa16.96■□□□□ 0.31
SHOX-201ENST00000334060 KIF2AO00139 706 aaPredicted RBP16.95■□□□□ 0.3
SHOX-201ENST00000334060 SNAP91O60641 907 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms