RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CHD5Q8TDI0 1954 aa16.33■□□□□ 0.2
CLN3-201ENST00000333496 TMCO5BA8MYB1 307 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 GYPCP04921 128 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 DLDP09622 509 aaKnown RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 HLA-EP13747 358 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 POLR2EP19388 210 aaKnown RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 RRM1P23921 792 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 SDC4P31431 198 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 CSKP41240 450 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 RPL7AP62424 266 aaKnown RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 MAP7D1Q3KQU3 841 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 PITRM1Q5JRX3 1037 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 RABGAP1LQ5R372 815 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 TTC39BQ5VTQ0 682 aaPredicted RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 CXorf57Q6NSI4 855 aaKnown RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 SERPINA13PQ6UXR4 307 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 APCDD1Q8J025 514 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 ZNF366Q8N895 744 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 OR52K2Q8NGK3 314 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 CPLX3Q8WVH0 158 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 C1orf74Q96LT6 269 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 MKRN2Q9H000 416 aaKnown RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 CD93Q9NPY3 652 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 TMEM51Q9NW97 253 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 KIAA1522Q9P206 1035 aaPredicted RBP16.32■□□□□ 0.2
CLN3-201ENST00000333496 PLA2G4CQ9UP65 541 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 PAXBP1Q9Y5B6 917 aa16.32■□□□□ 0.2
CLN3-201ENST00000333496 CNTN5O94779 1100 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 ATP5BP06576 529 aaKnown RBP16.31■□□□□ 0.2
CLN3-201ENST00000333496 EPHX1P07099 455 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 RETP07949 1114 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 GZMAP12544 262 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 NUMBP49757 651 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 HDAC4P56524 1084 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 E2F5Q15329 346 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 PLEKHG6Q3KR16 790 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 ALFQ53S48 1182 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 STRADAQ7RTN6 431 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 VCPIP1Q96JH7 1222 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 MRGPRX3Q96LB0 322 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 HAPLN3Q96S86 360 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 PARD6AQ9NPB6 346 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 MBD1Q9UIS9 605 aaPredicted RBP16.31■□□□□ 0.2
CLN3-201ENST00000333496 GMEB2Q9UKD1 530 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 DNAH14Q0VDD8 3507 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 ITIH6Q6UXX5 1313 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 GON4LQ3T8J9 2241 aa16.31■□□□□ 0.2
CLN3-201ENST00000333496 GPD1P21695 349 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 MZF1P28698 734 aaPredicted RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 CTSOP43234 321 aaPredicted RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 COPAP53621 1224 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 ZBED6P86452 979 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 STARD3Q14849 445 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 FNDC3BQ53EP0 1204 aaKnown RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 PMS2CLQ68D20 193 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 DNAJC24Q6P3W2 148 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 CCDC117Q8IWD4 279 aaPredicted RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 SYN2Q92777 582 aaPredicted RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 ALG14Q96F25 216 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 PDLIM2Q96JY6 352 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 MCEEQ96PE7 176 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 MAGEB5Q9BZ81 275 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 PI4KAP42356 2102 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 NUMA1Q14980 2115 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 IGLV3-10A0A075B6K4 115 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 DRGXA6NNA5 263 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 ATMINO43313 823 aaPredicted RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 PLEKP08567 350 aaPredicted RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 ADRA1BP35368 520 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 PLK1P53350 603 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 OGDHQ02218 1023 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 SPEM2Q0P670 501 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 CAMK2GQ13555 558 aaPredicted RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 SLC12A1Q13621 1099 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 KIAA2013Q8IYS2 634 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 FAM172AQ8WUF8 416 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 IQCDQ96DY2 449 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 LOXL4Q96JB6 756 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 MPP6Q9NZW5 540 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 ERVW-1Q9UQF0 538 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 TBC1D30Q9Y2I9 924 aa16.3■□□□□ 0.2
CLN3-201ENST00000333496 LUC7L2Q9Y383 392 aaKnown RBP16.3■□□□□ 0.2
CLN3-201ENST00000333496 E9PAM4 449 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 CCP110O43303 1012 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 SYNCRIPO60506 623 aaKnown RBP16.29■□□□□ 0.2
CLN3-201ENST00000333496 CLDN11O75508 207 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 EPN2O95208 641 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 FTLP02792 175 aaPredicted RBP16.29■□□□□ 0.2
CLN3-201ENST00000333496 ASLP04424 464 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 CASP14P31944 242 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 ZNF143P52747 638 aaPredicted RBP16.29■□□□□ 0.2
CLN3-201ENST00000333496 CDH4P55283 916 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 MAMLD1Q13495 774 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 PLEKHA7Q6IQ23 1121 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 PPP1R2P3Q6NXS1 205 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 ZSCAN30Q86W11 494 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 TMPRSS6Q8IU80 811 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 CCDC185Q8N715 623 aa16.29■□□□□ 0.2
CLN3-201ENST00000333496 ISCUQ9H1K1 167 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms