RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ARL8BQ9NVJ2 186 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 TTC3P53804 2025 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 POLBP06746 335 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 BPGMP07738 259 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 ITGA2BP08514 1039 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 CNTFP26441 200 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 HCAR3P49019 387 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 OCRLQ01968 901 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 PDE1CQ14123 709 aaPredicted RBP15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 SPDYAQ5MJ70 313 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 WLSQ5T9L3 541 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 MFSD14CQ5VZR4 134 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 ATG16L1Q676U5 607 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 FAM171BQ6P995 826 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 ALYREFQ86V81 257 aaKnown RBP15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 DNAAF3Q8N9W5 541 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 C7orf26Q96N11 449 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 EPAS1Q99814 870 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 ACBD6Q9BR61 282 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 NAT9Q9BTE0 207 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 EMCNQ9ULC0 261 aa15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 MRPL42Q9Y6G3 142 aaKnown RBP15.23■□□□□ 0.03
CLCNKA-201ENST00000331433 TDRD15B5MCY1 1934 aaKnown RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 E2F8A0AVK6 867 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 AP2A1O95782 977 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 F9P00740 461 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 GARSP41250 739 aaKnown RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 FLT3LGP49771 235 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 HSF5Q4G112 596 aaPredicted RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 N4BP2L1Q5TBK1 243 aaPredicted RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 PM20D1Q6GTS8 502 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 METTL23Q86XA0 190 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 TRIM42Q8IWZ5 723 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 DQX1Q8TE96 717 aaKnown RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 ZNF669Q96BR6 464 aaPredicted RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 CERS2Q96G23 380 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 ADAM2Q99965 735 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 MLPHQ9BV36 600 aaPredicted RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 UPF3AQ9H1J1 476 aaKnown RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 DMAP1Q9NPF5 467 aaPredicted RBP15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 SAR1AQ9NR31 198 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 UBP1Q9NZI7 540 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 VANGL2Q9ULK5 521 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 ZNF623O75123 536 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 ADAMTS4O75173 837 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 GSRP00390 522 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 SLC10A3P09131 477 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 SRGAP2BP0DMP2 458 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 NFKB1P19838 968 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 RASSF2P50749 326 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 PDE1BQ01064 536 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 GALNT2Q10471 571 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 LPIN1Q14693 890 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 KCNA10Q16322 511 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 ACCSLQ4AC99 568 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 PPM1JQ5JR12 505 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 HDAC11Q96DB2 347 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 ATXN7L3BQ96GX2 97 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 MIPEPQ99797 713 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 SIK2Q9H0K1 926 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 RRN3Q9NYV6 651 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 ARMCX1Q9P291 453 aa15.22■□□□□ 0.03
CLCNKA-201ENST00000331433 A0A0U1RQF3 1178 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 TRAFD1O14545 582 aaPredicted RBP15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 NCAM2O15394 837 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 SEPT4O43236 478 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 EZRP15311 586 aaKnown RBP15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 MX2P20592 715 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 PTPN4P29074 926 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 RPL10AP62906 217 aaKnown RBP15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 CERCAMQ5T4B2 595 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 RWDD4Q6NW29 188 aaKnown RBP15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 FAM13CQ8NE31 585 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 PKMYT1Q99640 499 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 NMUR2Q9GZQ4 415 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 GBA3Q9H227 469 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 BFARQ9NZS9 450 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 TXNDC16Q9P2K2 825 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 RAD54BQ9Y620 910 aa15.21■□□□□ 0.03
CLCNKA-201ENST00000331433 FCHO1O14526 889 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 ATP9BO43861 1147 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 DNAJC6O75061 913 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 JCHAINP01591 159 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 KCNA4P22459 653 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 PGFP49763 221 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 FASTKD1Q53R41 847 aaKnown RBP15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 KCTD11Q693B1 232 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 OVOS1Q6IE37 1185 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 CMC1Q7Z7K0 106 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 SMC1BQ8NDV3 1235 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 AZIN2Q96A70 460 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 MFSD3Q96ES6 412 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 PTCD3Q96EY7 689 aaKnown RBP15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 LRRC40Q9H9A6 602 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 TRMT13Q9NUP7 481 aaKnown RBP15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 LNPEPQ9UIQ6 1025 aa15.21■□□□□ 0.02
CLCNKA-201ENST00000331433 BIRC5O15392 142 aa15.2■□□□□ 0.02
CLCNKA-201ENST00000331433 SNNO75324 88 aaPredicted RBP15.2■□□□□ 0.02
CLCNKA-201ENST00000331433 CYP11A1P05108 521 aa15.2■□□□□ 0.02
CLCNKA-201ENST00000331433 TPH1P17752 444 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms