RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 NAT16Q8N8M0 369 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 CDK5RAP1Q96SZ6 601 aaKnown RBP10.38□□□□□ -0.75
CHD3-201ENST00000330494 TBCBQ99426 244 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 FBXL21Q9UKT6 434 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 MAFO75444 373 aaPredicted RBP10.38□□□□□ -0.75
CHD3-201ENST00000330494 SHBGP04278 402 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 CCND1P24385 295 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 PSMA4P25789 261 aaKnown RBP10.38□□□□□ -0.75
CHD3-201ENST00000330494 RPL7AP62424 266 aaKnown RBP10.38□□□□□ -0.75
CHD3-201ENST00000330494 EEF1DP3Q658K8 133 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 SCUBE1Q8IWY4 988 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 L1RE1Q9UN81 338 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 UMODL1Q5DID0 1318 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 TBC1D3BA6NDS4 549 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 SPATA31C2B4DYI2 1134 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 TBL1XO60907 577 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 RASSF9O75901 435 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 POLR2EP19388 210 aaKnown RBP10.38□□□□□ -0.75
CHD3-201ENST00000330494 ISLR2Q6UXK2 745 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 CFAP52Q8N1V2 620 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 ETNPPLQ8TBG4 499 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 CASP10Q92851 521 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 SEPHS2Q99611 448 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 CDHR5Q9HBB8 845 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 ABCC13Q9NSE7 274 aa10.38□□□□□ -0.75
CHD3-201ENST00000330494 THG1LQ9NWX6 298 aaKnown RBP10.38□□□□□ -0.75
CHD3-201ENST00000330494 SIGLEC1Q9BZZ2 1709 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 RBAK-RBAKDNI3L0D1 243 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 KRT16P08779 473 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 SCTRP47872 440 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 CLK2P49760 499 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 STX5Q13190 355 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 PPP1R26Q5T8A7 1209 aaPredicted RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 GRTP1Q5TC63 336 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 EFL1Q7Z2Z2 1120 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 SUGP1Q8IWZ8 645 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 SPATA6LQ8N4H0 392 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TNIP2Q8NFZ5 429 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 CCDC126Q96EE4 140 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TPD52L3Q96J77 140 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 DEFB118Q96PH6 123 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 NDNQ99608 321 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 RNPEPQ9H4A4 650 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 MIEF1Q9NQG6 463 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 CYP3A7-CYP3A51PA0A087WV96 503 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 A0A096LPK6 155 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 USP1O94782 785 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 WDR47O94967 919 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 NQO1P15559 274 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 CYP3A7P24462 503 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TPP2P29144 1249 aaPredicted RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 GRK3P35626 688 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 BRCC3P46736 316 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 NR2C2P49116 596 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 HSDL1Q3SXM5 330 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 ARSHQ5FYA8 562 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 NOMO2Q5JPE7 1267 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 RIPOR1Q6ZS17 1223 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 ZDHHC17Q8IUH5 632 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 CCNJLQ8IV13 435 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 FNDC5Q8NAU1 212 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TSEN2Q8NCE0 465 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 CSGALNACT1Q8TDX6 532 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 EMID1Q96A84 441 aaPredicted RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 ZFP42Q96MM3 310 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 STN1Q9H668 368 aaKnown RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 NOD2Q9HC29 1040 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 ETNK2Q9NVF9 386 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TUBGCP4Q9UGJ1 667 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 PEAK1Q9H792 1746 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 NCAM2O15394 837 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TPBGLP0DKB5 382 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 GOT1P17174 413 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 ABL2P42684 1182 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 RABGGTBP53611 331 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 GTF2BQ00403 316 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 IMPAD1Q9NX62 359 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 APPL1Q9UKG1 709 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TPP1O14773 563 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 THRAP10827 490 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 H2AFXP16104 143 aaPredicted RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 RPA3P35244 121 aaPredicted RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 MAP3K10Q02779 954 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 CCDC142Q17RM4 750 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 FAM180AQ6UWF9 173 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 SH3RF1Q7Z6J0 888 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 P3H2Q8IVL5 708 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 CCDC134Q9H6E4 229 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 EFCAB1Q9HAE3 211 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 FBXO6Q9NRD1 293 aaPredicted RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 MPOP05164 745 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 ZCCHC18P0CG32 403 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 PGAM1P18669 254 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TRAF2Q12933 501 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 SPANXN3Q5MJ09 141 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 VN1R5Q7Z5H4 357 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 SETD3Q86TU7 594 aaPredicted RBP10.37□□□□□ -0.75
CHD3-201ENST00000330494 HEATR4Q86WZ0 1026 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 TRAPPC5Q8IUR0 188 aa10.37□□□□□ -0.75
CHD3-201ENST00000330494 FIG4Q92562 907 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms