RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 NSMCE3Q96MG7 304 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 HIST1H2AJQ99878 128 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 H2AFJQ9BTM1 129 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 FN3KRPQ9HA64 309 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 VPS45Q9NRW7 570 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 MCM9Q9NXL9 1143 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 DNAJB4Q9UDY4 337 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 MTMR6Q9Y217 621 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 SNX24Q9Y343 169 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 IGF1RP08069 1367 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ERBB3P21860 1342 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC35F4A4IF30 521 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 K7ENM7 598 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 CD9P21926 228 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 RORAP35398 523 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC1A2P43004 574 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 FNTBP49356 437 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 CCR3P51677 355 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 VAMP7P51809 220 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 NCS1P62166 190 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 GALNT1Q10472 559 aaPredicted RBP7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 C3orf38Q5JPI3 329 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 WDR93Q6P2C0 686 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 CNKSR3Q6P9H4 555 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 ESPNLQ6ZVH7 1005 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF605Q86T29 641 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 METTL23Q86XA0 190 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF354BQ96LW1 612 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 MRPL22Q9NWU5 206 aaKnown RBP7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 TLR7Q9NYK1 1049 aaKnown RBP7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 HEY1Q9Y5J3 304 aa7.77□□□□□ -1.16
LIMCH1-201ENST00000313860 ZMYM3Q14202 1370 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 OR1I1O60431 355 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MICAL2O94851 1124 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CYP2C18P33260 490 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 SERPINB5P36952 375 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FMO5P49326 533 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CHRNB3Q05901 458 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 LRP8Q14114 963 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 KLHL26Q53HC5 615 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FAM92BQ6ZTR7 304 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ABTB2Q8N961 1025 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 DLG3Q92796 817 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 VPS33AQ96AX1 596 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 AKT1S1Q96B36 256 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FOPNLQ96NB1 174 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 DPP3Q9NY33 737 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 KIAA1257Q9ULG3 409 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ASF1AQ9Y294 204 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CCNT2O60583 730 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 COX4I1P13073 169 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 POU2F1P14859 743 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ABCG1P45844 678 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 SEPHS1P49903 392 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ELOAQ14241 798 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 RAB35Q15286 201 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 Q3C1V9 767 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 DOK6Q6PKX4 331 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CHST4Q8NCG5 386 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 KBTBD8Q8NFY9 601 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ELMO1Q92556 727 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 HEMGNQ9BXL5 484 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ARHGEF4Q9NR80 690 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 GPATCH2Q9NW75 528 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MED11Q9P086 117 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 HPCAL4Q9UM19 191 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FGD5Q6ZNL6 1462 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MAP3K19Q56UN5 1328 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 A0A1B0GV50 99 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 OR6C65A6NJZ3 312 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 LDHBP07195 334 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 TATP17735 454 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 VSX2P58304 361 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 GSTO1P78417 241 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MYL7Q01449 175 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 GALNTL6Q49A17 601 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ANO7Q6IWH7 933 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 TSPYL6Q8N831 410 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ACBD4Q8NC06 268 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ERP27Q96DN0 273 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 AIFM3Q96NN9 605 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ALPK1Q96QP1 1244 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 GPER1Q99527 375 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 TXN2Q99757 166 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FANCFQ9NPI8 374 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CFL2Q9Y281 166 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 PLEKHH2Q8IVE3 1493 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MBD5Q9P267 1494 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 NUAK1O60285 661 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CPNE3O75131 537 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FARS2O95363 451 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CFL1P23528 166 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CRABP2P29373 138 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FCER1GP30273 86 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FAUP35544 74 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 TRIM23P36406 574 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 FNTAP49354 379 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CSNK2A1P68400 391 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 NKX6-1P78426 367 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms