RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DEUP1Q05D60 604 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 ZNF33AQ06730 810 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 AUHQ13825 339 aaKnown RBP16.83■□□□□ 0.28
LSM1-201ENST00000311351 PLEKHG6Q3KR16 790 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 TRIM61Q5EBN2 209 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 SPDYCQ5MJ68 293 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 STPG1Q5TH74 334 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 CXorf57Q6NSI4 855 aaKnown RBP16.83■□□□□ 0.28
LSM1-201ENST00000311351 C14orf80Q86SX3 495 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 METTL3Q86U44 580 aaKnown RBP16.83■□□□□ 0.28
LSM1-201ENST00000311351 SYT12Q8IV01 421 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 EMC1Q8N766 993 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 SLC30A5Q8TAD4 765 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 NT5C3BQ969T7 300 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 TOE1Q96GM8 510 aaKnown RBP16.83■□□□□ 0.28
LSM1-201ENST00000311351 CFAP57Q96MR6 1250 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 PCDH15Q96QU1 1955 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 PCDHB18PQ96TA0 734 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 FUCA2Q9BTY2 467 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 TKTL2Q9H0I9 626 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 SIK2Q9H0K1 926 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 PRSS16Q9NQE7 514 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 RRN3Q9NYV6 651 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 KIAA1522Q9P206 1035 aaPredicted RBP16.83■□□□□ 0.28
LSM1-201ENST00000311351 TMEM59LQ9UK28 342 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 PILRBQ9UKJ0 227 aa16.83■□□□□ 0.28
LSM1-201ENST00000311351 NDUFS2O75306 463 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 GJB6O95452 261 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 ASLP04424 464 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 MMP8P22894 467 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 MZF1P28698 734 aaPredicted RBP16.82■□□□□ 0.28
LSM1-201ENST00000311351 CXCR3P49682 368 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 STK19P49842 368 aaPredicted RBP16.82■□□□□ 0.28
LSM1-201ENST00000311351 ZNF165P49910 485 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 LIMK1P53667 647 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 IRX4P78413 519 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 SLC25A52Q3SY17 297 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 TTC39BQ5VTQ0 682 aaPredicted RBP16.82■□□□□ 0.28
LSM1-201ENST00000311351 PEAR1Q5VY43 1037 aaPredicted RBP16.82■□□□□ 0.28
LSM1-201ENST00000311351 FAM124AQ86V42 546 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 OR52K2Q8NGK3 314 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 PGAP3Q96FM1 320 aaPredicted RBP16.82■□□□□ 0.28
LSM1-201ENST00000311351 GPR174Q9BXC1 333 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 FSCN3Q9NQT6 498 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 ITM2CQ9NQX7 267 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 ARHGEF38Q9NXL2 777 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 WSB2Q9NYS7 404 aaPredicted RBP16.82■□□□□ 0.28
LSM1-201ENST00000311351 ERVW-1Q9UQF0 538 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 DOCK4Q8N1I0 1966 aa16.82■□□□□ 0.28
LSM1-201ENST00000311351 CACNA1EQ15878 2313 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 SYCE3A1L190 88 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 TTC34A8MYJ7 566 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 MOCS3O95396 460 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 CFIP05156 583 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 ACADMP11310 421 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 ST8SIA6P61647 398 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 RAB6CQ53S08 254 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 BRMS1LQ5PSV4 323 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 IL31Q6EBC2 164 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 TRIM72Q6ZMU5 477 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 SND1Q7KZF4 910 aaKnown RBP eCLIP16.81■□□□□ 0.28
LSM1-201ENST00000311351 RPL10LQ96L21 214 aaKnown RBP16.81■□□□□ 0.28
LSM1-201ENST00000311351 RAB6CQ9H0N0 254 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 WDCPQ9H6R7 721 aa16.81■□□□□ 0.28
LSM1-201ENST00000311351 RTN4Q9NQC3 1192 aaKnown RBP16.81■□□□□ 0.28
LSM1-201ENST00000311351 SEPT11Q9NVA2 429 aaKnown RBP16.81■□□□□ 0.28
LSM1-201ENST00000311351 EVLQ9UI08 416 aaPredicted RBP16.81■□□□□ 0.28
LSM1-201ENST00000311351 ASCC3Q8N3C0 2202 aaKnown RBP16.81■□□□□ 0.28
LSM1-201ENST00000311351 C4orf47A7E2U8 309 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 SMTNL1A8MU46 457 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 SIN3BO75182 1162 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 CNTN5O94779 1100 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 IGLV3-19P01714 112 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 UNGP13051 313 aaPredicted RBP16.8■□□□□ 0.28
LSM1-201ENST00000311351 RPS14P62263 151 aaKnown RBP16.8■□□□□ 0.28
LSM1-201ENST00000311351 ATP11AP98196 1134 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 ECT2LQ008S8 904 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 PTP4A2Q12974 167 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 IQCB1Q15051 598 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 CLEC16AQ2KHT3 1053 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 KLHL40Q2TBA0 621 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 HNRNPA1L2Q32P51 320 aaKnown RBP16.8■□□□□ 0.28
LSM1-201ENST00000311351 BNIPLQ7Z465 357 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 FAM131BQ86XD5 332 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 JOSD2Q8TAC2 188 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 ZNF419Q96HQ0 510 aaPredicted RBP16.8■□□□□ 0.28
LSM1-201ENST00000311351 SLCO3A1Q9UIG8 710 aa16.8■□□□□ 0.28
LSM1-201ENST00000311351 ITIH6Q6UXX5 1313 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 MEI4A8MW99 385 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 F9P00740 461 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 MAOBP27338 520 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 RDXP35241 583 aaKnown RBP16.79■□□□□ 0.28
LSM1-201ENST00000311351 MAPK8P45983 427 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 NSFP46459 744 aaKnown RBP16.79■□□□□ 0.28
LSM1-201ENST00000311351 FOXK2Q01167 660 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 MTA1Q13330 715 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 CDO1Q16878 200 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 C15orf59Q2T9L4 293 aaPredicted RBP16.79■□□□□ 0.28
LSM1-201ENST00000311351 C5orf22Q49AR2 442 aa16.79■□□□□ 0.28
LSM1-201ENST00000311351 ALFQ53S48 1182 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms