RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 MPP5Q8N3R9 675 aa23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 CCDC197Q8NCU1 140 aa23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 FERMT1Q9BQL6 677 aa23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 KLHL8Q9P2G9 620 aaPredicted RBP23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 MTRRQ9UBK8 725 aa23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 FETUBQ9UGM5 382 aa23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 TLR6Q9Y2C9 796 aa23.05■■□□□ 1.28
PDLIM2-202ENST00000308354 COL4A6Q14031 1691 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 DFFAO00273 331 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 RTN3O95197 1032 aaPredicted RBP23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 SERPINB6P35237 376 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 TBX4P57082 545 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 GALNT2Q10471 571 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 C10orf120Q5SQS8 335 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 SLC8B1Q6J4K2 584 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 AGAP3Q96P47 875 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 SMC6Q96SB8 1091 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 DHRS4Q9BTZ2 278 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 NSRP1Q9H0G5 558 aaKnown RBP23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 TLR8Q9NR97 1041 aaKnown RBP23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 SAMD15Q9P1V8 674 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 ATP2A2P16615 1042 aaKnown RBP23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 TPSB2P20231 275 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 TUBP50607 506 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 ZNF135P52742 658 aaPredicted RBP23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 WDR4P57081 412 aaKnown RBP23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 ZBTB17Q13105 803 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 OLIG2Q13516 323 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 SPARCL1Q14515 664 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 TPSAB1Q15661 275 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 PIK3R6Q5UE93 754 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 MSANTD2Q6P1R3 559 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 MCUQ8NE86 351 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 SLC39A13Q96H72 371 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 SPATA17Q96L03 361 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 CLSTN3Q9BQT9 956 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 CCSER2Q9H7U1 834 aa23.04■■□□□ 1.28
PDLIM2-202ENST00000308354 PLXNA3P51805 1871 aa23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 TCRBV9S1A1TA0A576 114 aa23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 NUGGCQ68CJ6 796 aa23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 ADGRD1Q6QNK2 874 aa23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 RNF168Q8IYW5 571 aaPredicted RBP23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 TGS1Q96RS0 853 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 SENP1Q9P0U3 644 aa23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 ZC3H7BQ9UGR2 993 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 VANGL2Q9ULK5 521 aa23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 MAD1L1Q9Y6D9 718 aa23.03■■□□□ 1.28
PDLIM2-202ENST00000308354 SLC38A8A6NNN8 435 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 E9PAM4 449 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 NCAM2O15394 837 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 PRPF4O43172 522 aaKnown RBP eCLIP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 TIMP1P01033 207 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 TSHRP16473 764 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 MX2P20592 715 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 FDFT1P37268 417 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 RPL10AP62906 217 aaKnown RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 SMARCB1Q12824 385 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 BTG3Q14201 252 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 ZKSCAN8Q15776 578 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 MANEALQ5VSG8 457 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 CCDC121Q6ZUS5 278 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 DCAKDQ8WVC6 231 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 ARMC5Q96C12 935 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 ZNF689Q96CS4 500 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 HDAC11Q96DB2 347 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 TBC1D31Q96DN5 1066 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 SGSM3Q96HU1 749 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 PAIP2Q9BPZ3 127 aaKnown RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 MARCH2Q9P0N8 246 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 RAD54BQ9Y620 910 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 ABHD14A-ACY1A0A1B0GW23 586 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 ZBTB24O43167 697 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 RAG1P15918 1043 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 CRADDP78560 199 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 PARP6Q2NL67 630 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 PRPF39Q86UA1 669 aaKnown RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 AUTS2Q8WXX7 1259 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 SIGLEC10Q96LC7 697 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 FRMD8Q9BZ67 464 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 RASSF4Q9H2L5 321 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 PLAC1Q9HBJ0 212 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 CLIC5Q9NZA1 410 aa23.02■■□□□ 1.28
PDLIM2-202ENST00000308354 SEC24AO95486 1093 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 RPA3P35244 121 aaPredicted RBP23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 MSH2P43246 934 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 MAGEA3P43357 314 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 MLLT6P55198 1093 aaPredicted RBP23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 WDR5P61964 334 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 SPRED3Q2MJR0 410 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 KBTBD12Q3ZCT8 623 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 OTOP2Q7RTS6 562 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 ANKS4BQ8N8V4 417 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 DENND1AQ8TEH3 1009 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 USP33Q8TEY7 942 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 C2orf15Q8WU43 125 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 MAGEB18Q96M61 343 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 CYTH2Q99418 400 aa23.01■■□□□ 1.27
PDLIM2-202ENST00000308354 SHROOM3Q8TF72 1996 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms