RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PIGKQ92643 395 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 HOPXQ9BPY8 73 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 KCTD14Q9BQ13 255 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 GPATCH2Q9NW75 528 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 GGA3Q9NZ52 723 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 MADDQ8WXG6 1647 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SLC2A3P11169 496 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 ACADSBP45954 432 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 GYS2P54840 703 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 VPS26BQ4G0F5 336 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 RABL3Q5HYI8 236 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 MFSD5Q6N075 450 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 IFNL1Q8IU54 200 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SLC30A8Q8IWU4 369 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 OR8H1Q8NGG4 311 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 VANGL1Q8TAA9 524 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PIWIL2Q8TC59 973 aaKnown RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PLEKHO2Q8TD55 490 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF518BQ9C0D4 1074 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 DHX33Q9H6R0 707 aaKnown RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 FETUBQ9UGM5 382 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 MAP3K4Q9Y6R4 1608 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PCP4L1A6NKN8 68 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SASH3O75995 380 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SBK2P0C263 348 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SRGNP10124 158 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 UQCRC1P31930 480 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 HPCAL1P37235 193 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SRP54P61011 504 aaKnown RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 RNF219Q5W0B1 726 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 KLHL35Q6PF15 583 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 MB21D2Q8IYB1 491 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SETDB2Q96T68 719 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PRKD2Q9BZL6 878 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 C17orf75Q9HAS0 396 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SLC39A2Q9NP94 309 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PSMD13Q9UNM6 376 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 AAR2Q9Y312 384 aaKnown RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 MALRD1Q5VYJ5 2156 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 EML5Q05BV3 1969 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 GPIP06744 558 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 MTHFD1P11586 935 aaKnown RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 ACTR3P61158 418 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 CHRNDQ07001 517 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PRKG2Q13237 762 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PDK2Q15119 407 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 PLEKHN1Q494U1 663 aaPredicted RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 DENND1BQ6P3S1 775 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 FRMD7Q6ZUT3 714 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SLC26A11Q86WA9 606 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 COLGALT2Q8IYK4 626 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 CMTR2Q8IYT2 770 aaKnown RBP4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SLC39A1Q9NY26 324 aa4.93□□□□□ -1.62
CSMD3-201ENST00000297405 SPG11Q96JI7 2443 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ARHGEF11O15085 1522 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 LRRK1Q38SD2 2015 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TTC26A0AVF1 554 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 B4E1Z4 1266 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ECM2O94769 699 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 NR3C1P04150 777 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 SLC18A1P54219 525 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 NRG3P56975 720 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 JAMLQ86YT9 394 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 OR8H3Q8N146 312 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 SMYD1Q8NB12 490 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RAD54LQ92698 747 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 THUMPD3Q9BV44 507 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TNPO3Q9Y5L0 923 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 E9PBE3 544 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 STMND1H3BQB6 276 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 LSM8O95777 96 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 NUDT17P0C025 328 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PRKAR1BP31321 381 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 FOLH1Q04609 750 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 GRSF1Q12849 480 aaKnown RBP eCLIP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MXD4Q14582 209 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RBBP7Q16576 425 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TMEM31Q5JXX7 168 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RBM44Q6ZP01 1051 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 NSUN7Q8NE18 718 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 C18orf8Q96DM3 657 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TEFMQ96QE5 360 aaKnown RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 DENND2DQ9H6A0 471 aaPredicted RBP4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ADPRHL2Q9NX46 363 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MAN2B2Q9Y2E5 1009 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PCDHGB3Q9Y5G1 929 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF518AQ6AHZ1 1483 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TRAPPC13A5PLN9 417 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 RB1P06400 928 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 MAPK12P53778 367 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 TPTEP56180 551 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PHC1P78364 1004 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ACAP1Q15027 740 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PDK4Q16654 411 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PCK2Q16822 640 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZSWIM7Q19AV6 140 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 BMT2Q1RMZ1 405 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 ZBED5Q49AG3 693 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 PLEKHG4Q58EX7 1191 aa4.92□□□□□ -1.62
CSMD3-201ENST00000297405 QSOX2Q6ZRP7 698 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms