RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 KCNK4Q9NYG8 393 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 OR12D3Q9UGF7 316 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 CCDC78A2IDD5 438 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 TNPO2O14787 897 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 ATP9BO43861 1147 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 SNNO75324 88 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 WFS1O76024 890 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 TPH1P17752 444 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 CD68P34810 354 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 BRCC3P46736 316 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 RAB41Q5JT25 222 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 TREML1Q86YW5 311 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 MYLPFQ96A32 169 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 CERS2Q96G23 380 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 SLC9A7Q96T83 725 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 AGAP2Q99490 1192 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 RTP3Q9BQQ7 232 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 TLE6Q9H808 572 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 Q9Y3F1 56 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 SHROOM3Q8TF72 1996 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 GSC2O15499 205 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 ENO1P06733 434 aaKnown RBP18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 SRGAP2BP0DMP2 458 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 AKR1A1P14550 325 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 ALDH18A1P54886 795 aaKnown RBP18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 CERCAMQ5T4B2 595 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 TLDC1Q6P9B6 456 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 TMEM86AQ8N2M4 240 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 RNF34Q969K3 372 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 NTAN1Q96AB6 310 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 RILPQ96NA2 401 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 TMEM209Q96SK2 561 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 APBA2Q99767 749 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 RNPEPL1Q9HAU8 725 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 PRDM16Q9HAZ2 1276 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 TAS2R1Q9NYW7 299 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 CDH9Q9ULB4 789 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 VANGL2Q9ULK5 521 aa18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 HBS1LQ9Y450 684 aaKnown RBP18.8■□□□□ 0.6
SHKBP1-201ENST00000291842 BIRC5O15392 142 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 B3GAT3O94766 335 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 CALB2P22676 271 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 CTGFP29279 349 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 TYK2P29597 1187 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 SCAPQ12770 1279 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 RCN2Q14257 317 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 UPP1Q16831 310 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 C17orf99Q6UX52 265 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 KYAT3Q6YP21 454 aaKnown RBP18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 PDZD4Q76G19 769 aaPredicted RBP18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 CCNJLQ8IV13 435 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 FBXO27Q8NI29 283 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 MFSD3Q96ES6 412 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 SMARCD1Q96GM5 515 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 TMLHEQ9NVH6 421 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 LRIG2O94898 1065 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 NFKB1P19838 968 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 PPIDQ08752 370 aaKnown RBP18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 IRF5Q13568 498 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 ARL13BQ3SXY8 428 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 MBLAC2Q68D91 279 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 TAC4Q86UU9 113 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 KIRREL3Q8IZU9 778 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 USP33Q8TEY7 942 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 MLPHQ9BV36 600 aaPredicted RBP18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 SENP6Q9GZR1 1112 aaPredicted RBP18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 SIK2Q9H0K1 926 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 TMEM216Q9P0N5 145 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 INPP5FQ9Y2H2 1132 aa18.79■□□□□ 0.6
SHKBP1-201ENST00000291842 C9IYK1 514 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 GOLGA8TH3BQL2 631 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 PLIN3O60664 434 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 HNRNPCL1O60812 293 aaKnown RBP18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 AP2A1O95782 977 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 FGF3P11487 239 aaPredicted RBP18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 CD52P31358 61 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 GJA9P57773 515 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 ATG14Q6ZNE5 492 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 C10orf107Q8IVU9 208 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 SCAMP5Q8TAC9 235 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 MCUR1Q96AQ8 359 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 NAT9Q9BTE0 207 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 F8W810 466 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 MGEA5O60502 916 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 GLRA3O75311 464 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 PRKCGP05129 697 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 KDSRQ06136 332 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 KRT72Q14CN4 511 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 PCLAFQ15004 111 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 KHDC1Q4VXA5 237 aaKnown RBP18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 RWDD4Q6NW29 188 aaKnown RBP18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 C4orf50Q6ZRC1 276 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 STRA8Q7Z7C7 330 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 DCLK2Q8N568 766 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 ATP2A3Q93084 1043 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 ZNF778Q96MU6 729 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 ZNF570Q96NI8 536 aa18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 MTG1Q9BT17 334 aaPredicted RBP18.78■□□□□ 0.6
SHKBP1-201ENST00000291842 TUBB6Q9BUF5 446 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms