RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 ST3GAL2Q16842 350 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 HNRNPA1L2Q32P51 320 aaKnown RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 DPCR1Q3MIW9 517 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 PITRM1Q5JRX3 1037 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 EFHC1Q5JVL4 640 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 RAP1GAP2Q684P5 730 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 CCDC117Q8IWD4 279 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 LGI2Q8N0V4 545 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 DEFB106AQ8N104 65 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 ZCCHC9Q8N567 271 aaKnown RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 MRGPRX3Q96LB0 322 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 SLC2A13Q96QE2 648 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 PRMT1Q99873 361 aaKnown RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 MIR1-1HGQ9H1L0 117 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 RSPH9Q9H1X1 276 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 NDST4Q9H3R1 872 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 C6orf106Q9H6K1 298 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 ASNSD1Q9NWL6 643 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 KIAA1522Q9P206 1035 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 EIF2B4Q9UI10 523 aaKnown RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 DNAJC12Q9UKB3 198 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 AJAP1Q9UKB5 411 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 MYO16Q9Y6X6 1858 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 KIAA1549LQ6ZVL6 1849 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SPAARA0A1B0GVQ0 90 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 H0Y626 953 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SH3BP5O60239 455 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 HSF2BPO75031 334 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 KRT37O76014 449 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SRPRAP08240 638 aaKnown RBP10.05□□□□□ -0.8
VPS41-201ENST00000265745 SLC2A3P11169 496 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SPINK2P20155 84 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 CCR1P32246 355 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 KRT9P35527 623 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 CTSOP43234 321 aaPredicted RBP10.05□□□□□ -0.8
VPS41-201ENST00000265745 ST8SIA6P61647 398 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 FAM193AP78312 1265 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SIM1P81133 766 aaPredicted RBP10.05□□□□□ -0.8
VPS41-201ENST00000265745 ECT2LQ008S8 904 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 BNC1Q01954 994 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 HNRNPDQ14103 355 aaKnown RBP10.05□□□□□ -0.8
VPS41-201ENST00000265745 TPD52L1Q16890 204 aaPredicted RBP10.05□□□□□ -0.8
VPS41-201ENST00000265745 VWA3BQ502W6 1294 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 MIIPQ5JXC2 388 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 C9orf64Q5T6V5 341 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 ZNF776Q68DI1 518 aaPredicted RBP10.05□□□□□ -0.8
VPS41-201ENST00000265745 C11orf57Q6ZUT1 292 aaPredicted RBP10.05□□□□□ -0.8
VPS41-201ENST00000265745 LAPTM4BQ86VI4 370 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SLC47A2Q86VL8 602 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 CHSY1Q86X52 802 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 PASD1Q8IV76 773 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 FAM114A1Q8IWE2 563 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 FAM71AQ8IYT1 594 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 APCDD1Q8J025 514 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 ATP6V0D2Q8N8Y2 350 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 NOX5Q96PH1 765 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 UCN2Q96RP3 112 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 TUBGCP2Q9BSJ2 902 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SCNM1Q9BWG6 230 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 BTBD1Q9H0C5 482 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SGK2Q9HBY8 427 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 DDIT4Q9NX09 232 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SLC12A6Q9UHW9 1150 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SLCO3A1Q9UIG8 710 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 ERVW-1Q9UQF0 538 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 SLCO1B1Q9Y6L6 691 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 RALGAPA1Q6GYQ0 2036 aa10.05□□□□□ -0.8
VPS41-201ENST00000265745 TARSL2A2RTX5 802 aaKnown RBP10.04□□□□□ -0.8
VPS41-201ENST00000265745 TTC34A8MYJ7 566 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 F5H5T6 163 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 SIN3BO75182 1162 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 GRAP2O75791 330 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 MOCS3O95396 460 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 SEMA4FO95754 770 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 DNTTP04053 509 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 ERBB2P04626 1255 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 PROS1P07225 676 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 PNMA6AP0CW24 399 aaPredicted RBP10.04□□□□□ -0.8
VPS41-201ENST00000265745 ABCB4P21439 1286 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 SOX11P35716 441 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 CSNK1EP49674 416 aaKnown RBP10.04□□□□□ -0.8
VPS41-201ENST00000265745 SNX16P57768 344 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 BPIFB4P59827 614 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 SLC6A3Q01959 620 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 KCNMA1Q12791 1236 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 SLC12A1Q13621 1099 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 HLA-BQ31612 363 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 TTC31Q49AM3 519 aaPredicted RBP10.04□□□□□ -0.8
VPS41-201ENST00000265745 PTPN20Q4JDL3 420 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 OR6B2Q6IFH4 312 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 FBXL22Q6P050 247 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 OLFML1Q6UWY5 402 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 FAM183BPQ6ZVS7 135 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 USP30Q70CQ3 517 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 SLC26A9Q7LBE3 791 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 RETREG3Q86VR2 466 aa10.04□□□□□ -0.8
VPS41-201ENST00000265745 DHX40Q8IX18 779 aaKnown RBP10.04□□□□□ -0.8
VPS41-201ENST00000265745 C1orf131Q8NDD1 294 aaKnown RBP10.04□□□□□ -0.8
VPS41-201ENST00000265745 ZNF397Q8NF99 534 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms