RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ADORA2AP29274 412 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 NR6A1Q15406 480 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 TRMT5Q32P41 509 aaKnown RBP19.51■□□□□ 0.71
UPF1-201ENST00000262803 ARHGAP17Q68EM7 881 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 PALB2Q86YC2 1186 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 DNAJB3Q8WWF6 145 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 KAT2BQ92831 832 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 CHST7Q9NS84 486 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 GPRC5DQ9NZD1 345 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 RABGEF1Q9UJ41 708 aa19.51■□□□□ 0.71
UPF1-201ENST00000262803 MAGEA10P43363 369 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 TUBP50607 506 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 RIOX2Q8IUF8 465 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 C18orf25Q96B23 403 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 FAM136AQ96C01 138 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 DIABLOQ9NR28 239 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 POLE3Q9NRF9 147 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 ZNF446Q9NWS9 450 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 NCF1BA6NI72 391 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 PDZK1P1A8MUH7 402 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 NCF1CA8MVU1 366 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 KLRC4O43908 158 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 ZNF286BP0CG31 522 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 NCF1P14598 390 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 NME5P56597 212 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 CSHL1Q14406 222 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 CES5AQ6NT32 575 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 MAP4K3Q8IVH8 894 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 SYTL1Q8IYJ3 562 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 TMEM199Q8N511 208 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 B3GALNT2Q8NCR0 500 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 SUSD6Q92537 303 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 BHMTQ93088 406 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 KCTD14Q9BQ13 255 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 STAU1O95793 577 aaKnown RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 FKBP1BP68106 108 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 N4BP2L1Q5TBK1 243 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 REM2Q8IYK8 340 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 ZNF614Q8N883 585 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 C2orf49Q9BVC5 232 aaPredicted RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 BBS2Q9BXC9 721 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.5■□□□□ 0.719e-6■■■■□ 25.2
UPF1-201ENST00000262803 ADPRHL2Q9NX46 363 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 PSMC3P17980 439 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 CES1P23141 567 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 DGKAP23743 735 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 RPL3P39023 403 aaKnown RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 ST13P50502 369 aaKnown RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 UBE3AQ05086 875 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 IZUMO2Q6UXV1 221 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 SETD9Q8NE22 299 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 USP7Q93009 1102 aa19.5■□□□□ 0.71
UPF1-201ENST00000262803 POLR1EQ9GZS1 481 aaKnown RBP19.5■□□□□ 0.71
UPF1-201ENST00000262803 FOXR1Q6PIV2 292 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 CLYBLQ8N0X4 340 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 AHCYL2Q96HN2 611 aaKnown RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 MYPNQ86TC9 1320 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 RGS14O43566 566 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 CASP5P51878 434 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 CDK16Q00536 496 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 DEFB128Q7Z7B8 93 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 KCNMB4Q86W47 210 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 EIF1ADQ8N9N8 165 aaKnown RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 ST13P5Q8NFI4 369 aaPredicted RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 ACTRT2Q8TDY3 377 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 ZNF558Q96NG5 402 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 PNMA8BQ9ULN7 279 aaPredicted RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 CD3EAPO15446 510 aaKnown RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 LRRC55Q6ZSA7 311 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 APOPT1Q96IL0 206 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 CEP41Q9BYV8 373 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 FCHO1O14526 889 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 MICAL2O94851 1124 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 ADIGQ0VDE8 80 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 CCDC92Q53HC0 331 aaPredicted RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 MIIPQ5JXC2 388 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 UGT2B28Q9BY64 529 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 CAPN10Q9HC96 672 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 PALMDQ9NP74 551 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 MRPL17Q9NRX2 175 aaKnown RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 SF3B1O75533 1304 aaKnown RBP eCLIP19.49■□□□□ 0.716e-7■■■■■ 154
UPF1-201ENST00000262803 TISP43B9A030 160 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 NDUFB5O43674 189 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 ZBTB14O43829 449 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 LY6KQ17RY6 165 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 FNDC3BQ53EP0 1204 aaKnown RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 ARMCX4Q5H9R4 360 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 APOBEC3HQ6NTF7 200 aaKnown RBP19.49■□□□□ 0.71
UPF1-201ENST00000262803 WDR59Q6PJI9 974 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 TMPRSS6Q8IU80 811 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 DEFB107AQ8IZN7 70 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 MOSPD2Q8NHP6 518 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 MAGED4Q96JG8 741 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 FBXL21Q9UKT6 434 aa19.49■□□□□ 0.71
UPF1-201ENST00000262803 TRAV19A0A0A6YYK7 116 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 TSHRP16473 764 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 ACOX1Q15067 660 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 C15orf52Q6ZUT6 534 aaKnown RBP19.48■□□□□ 0.71
UPF1-201ENST00000262803 C1orf186Q6ZWK4 172 aa19.48■□□□□ 0.71
UPF1-201ENST00000262803 TMEM132CQ8N3T6 1108 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms