RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RMND5BQ96G75 393 aaPredicted RBP14.7□□□□□ -0.06
SDC1-201ENST00000254351 ABHD8Q96I13 439 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 RPL10LQ96L21 214 aaKnown RBP14.7□□□□□ -0.06
SDC1-201ENST00000254351 LGMNQ99538 433 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 CGRRF1Q99675 332 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 APOL2Q9BQE5 337 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 ZNF696Q9H7X3 374 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 SORCS3Q9UPU3 1222 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 TK2O00142 265 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 PSMD12O00232 456 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 APOL1O14791 398 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 GLRA3O75311 464 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 OCM2P0CE71 109 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 OCMP0CE72 109 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 NME3Q13232 169 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 ZNF423Q2M1K9 1284 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 WDR78Q5VTH9 848 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 GK5Q6ZS86 529 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 PCDH19Q8TAB3 1148 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 DDI1Q8WTU0 396 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 C12orf43Q96C57 262 aaKnown RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 RNF157Q96PX1 679 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 GCOM2Q9BZD3 368 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 NIF3L1Q9GZT8 377 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 SOX17Q9H6I2 414 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 AURKCQ9UQB9 309 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 FAM159BA6NKW6 160 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 ZBTB11O95625 1053 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 ASS1P00966 412 aaKnown RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 ALOX15P16050 662 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 ME2P23368 584 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 NME5P56597 212 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 PDAP1Q13442 181 aaKnown RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 APOFQ13790 326 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 PTK2BQ14289 1009 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 NEDD8Q15843 81 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 RPS27LQ71UM5 84 aaKnown RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 ERI1Q8IV48 349 aaKnown RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 OFCC1Q8IZS5 231 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 C12orf29Q8N999 325 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 CMASQ8NFW8 434 aaPredicted RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 CLEC4DQ8WXI8 215 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 DCPSQ96C86 337 aaKnown RBP14.69□□□□□ -0.06
SDC1-201ENST00000254351 WNK4Q96J92 1243 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 OMDQ99983 421 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 RTKNQ9BST9 563 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 CDH19Q9H159 772 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 SDCBP2Q9H190 292 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 THEGQ9P2T0 379 aa14.69□□□□□ -0.06
SDC1-201ENST00000254351 PRKCGP05129 697 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 GJB1P08034 283 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 MX2P20592 715 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 BAATQ14032 418 aaPredicted RBP14.68□□□□□ -0.06
SDC1-201ENST00000254351 FGD3Q5JSP0 725 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 SCYL1Q96KG9 808 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 FERMT1Q9BQL6 677 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 TRIM8Q9BZR9 551 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 PCDH18Q9HCL0 1135 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 RNF19AQ9NV58 838 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 FAIMQ9NVQ4 179 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 ARHGAP28Q9P2N2 729 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 MYRFQ9Y2G1 1151 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 MRPL42Q9Y6G3 142 aaKnown RBP14.68□□□□□ -0.06
SDC1-201ENST00000254351 KCNU1A8MYU2 1149 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 K7EPI3 171 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 TRDMT1O14717 391 aaKnown RBP14.68□□□□□ -0.06
SDC1-201ENST00000254351 AKAP10O43572 662 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 DGAT1O75907 488 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 ATE1O95260 518 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 H6PDO95479 791 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 PIM1P11309 404 aaPredicted RBP14.68□□□□□ -0.06
SDC1-201ENST00000254351 PTPN7P35236 360 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 NAGLUP54802 743 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 YWHAEP62258 255 aaKnown RBP14.68□□□□□ -0.06
SDC1-201ENST00000254351 GNA12Q03113 381 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 GPR141Q7Z602 305 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 SNX29P2Q8IUI4 249 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 SCUBE3Q8IX30 993 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 BBS5Q8N3I7 341 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 CCNYQ8ND76 341 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 NTPCRQ9BSD7 190 aaKnown RBP14.68□□□□□ -0.06
SDC1-201ENST00000254351 HAUS8Q9BT25 410 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 OSBPL6Q9BZF3 934 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 SNX15Q9NRS6 342 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 ANKEF1Q9NU02 776 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 DNAJC28Q9NX36 388 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 SLX4Q8IY92 1834 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 TMEM221A6NGB7 291 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 C9JVG2 144 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 FBP2O00757 339 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 VAPBO95292 243 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 JAK3P52333 1124 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 IFNLR1Q8IU57 520 aaPredicted RBP14.68□□□□□ -0.06
SDC1-201ENST00000254351 LZICQ8WZA0 190 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 PDCD2LQ9BRP1 358 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 B3GNT5Q9BYG0 378 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 COQ6Q9Y2Z9 468 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 RIPK3Q9Y572 518 aa14.68□□□□□ -0.06
SDC1-201ENST00000254351 PCDHA11Q9Y5I1 949 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms