RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 CDK16Q00536 496 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 NME3Q13232 169 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 PLD1Q13393 1074 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 TDGQ13569 410 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 FAM153CQ494X1 144 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 ZC3H12AQ5D1E8 599 aaKnown RBP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 IZUMO3Q5VZ72 239 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 DENND2CQ68D51 928 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 DARS2Q6PI48 645 aaKnown RBP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 POTEHQ6S545 545 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 RFX8Q6ZV50 586 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 DDX42Q86XP3 938 aaKnown RBP eCLIP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 TMEM105Q8N8V8 129 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 TRMT2BQ96GJ1 504 aaKnown RBP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 OLFM3Q96PB7 478 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 PPP1R2P1Q96PQ5 205 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 QKIQ96PU8 341 aaKnown RBP eCLIP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 VAT1Q99536 393 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 ROPN1BQ9BZX4 212 aaPredicted RBP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 KLC2Q9H0B6 622 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 STMN4Q9H169 189 aaPredicted RBP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 ROPN1Q9HAT0 212 aaPredicted RBP13.6□□□□□ -0.23
SLIRP-201ENST00000238688 IGSF9Q9P2J2 1179 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 FAM153AQ9UHL3 310 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 DUSP12Q9UNI6 340 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 CDY1Q9Y6F8 540 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 CACNA1IQ9P0X4 2223 aa13.6□□□□□ -0.23
SLIRP-201ENST00000238688 C5orf60A6NFR6 353 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ANHXE9PGG2 379 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 H7C0C1 242 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 GCATO75600 419 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 HNRNPA1P09651 372 aaKnown RBP eCLIP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ZDHHC11BP0C7U3 371 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 TFE3P19532 575 aaPredicted RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 HOXA9P31269 272 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 GBP2P32456 591 aaPredicted RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ATP5OP48047 213 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ITGA8P53708 1063 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 TPI1P60174 286 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 DYNLT1P63172 113 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 COG7P83436 770 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 GPS1Q13098 491 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 RNASEH2BQ5TBB1 312 aaKnown RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 CWF19L1Q69YN2 538 aaKnown RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ELMSAN1Q6PJG2 1045 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 GRASPQ7Z6J2 395 aaPredicted RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 TAC4Q86UU9 113 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ALYREFQ86V81 257 aaKnown RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 SLC44A3Q8N4M1 653 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ST13P5Q8NFI4 369 aaPredicted RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 MYRFLQ96LU7 910 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 TMEM121Q9BTD3 319 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 ADAM33Q9BZ11 813 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 NEUROG2Q9H2A3 272 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 CATSPERBQ9H7T0 1116 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 PIDD1Q9HB75 910 aa13.59□□□□□ -0.23
SLIRP-201ENST00000238688 UXTQ9UBK9 157 aaPredicted RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 HBS1LQ9Y450 684 aaKnown RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 FARP1Q9Y4F1 1045 aaPredicted RBP13.59□□□□□ -0.23
SLIRP-201ENST00000238688 HMGB1P1B2RPK0 211 aaPredicted RBP13.58□□□□□ -0.24
SLIRP-201ENST00000238688 DCLK1O15075 740 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 TP73O15350 636 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 CCL16O15467 120 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 OPHN1O60890 802 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 SPAG6O75602 509 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 TCEA3O75764 348 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 APOEP02649 317 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 IVLP07476 585 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 POU2F2P09086 479 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 PECAM1P16284 738 aaPredicted RBP13.58□□□□□ -0.24
SLIRP-201ENST00000238688 MMRN1Q13201 1228 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 HTR4Q13639 388 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 VEPH1Q14D04 833 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 TRADDQ15628 312 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 CA9Q16790 459 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 MGAT5BQ3V5L5 792 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 PPM1LQ5SGD2 360 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 ARMC3Q5W041 872 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 NUGGCQ68CJ6 796 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 NCBP2-AS2Q69YL0 99 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 HEATR6Q6AI08 1181 aaKnown RBP13.58□□□□□ -0.24
SLIRP-201ENST00000238688 CENPUQ71F23 418 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 GET4Q7L5D6 327 aaPredicted RBP13.58□□□□□ -0.24
SLIRP-201ENST00000238688 SCD5Q86SK9 330 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 ATAD1Q8NBU5 361 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 SCAMP5Q8TAC9 235 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 TFB1MQ8WVM0 346 aaKnown RBP13.58□□□□□ -0.24
SLIRP-201ENST00000238688 FATE1Q969F0 183 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 RNF34Q969K3 372 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 FBXO32Q969P5 355 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 LRRC39Q96DD0 335 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 RPP25Q9BUL9 199 aaKnown RBP13.58□□□□□ -0.24
SLIRP-201ENST00000238688 USP29Q9HBJ7 922 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 HCFC1R1Q9NWW0 138 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 DNMT3BQ9UBC3 853 aaKnown RBP13.58□□□□□ -0.24
SLIRP-201ENST00000238688 OR12D3Q9UGF7 316 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 ASB3Q9Y575 518 aa13.58□□□□□ -0.24
SLIRP-201ENST00000238688 COL4A3Q01955 1670 aa13.57□□□□□ -0.24
SLIRP-201ENST00000238688 WDR27A2RRH5 827 aa13.57□□□□□ -0.24
SLIRP-201ENST00000238688 WASH4PA8MWX3 477 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms