RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ASNSD1Q9NWL6 643 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 OCIAD1Q9NX40 245 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MKS1Q9NXB0 559 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 DDX43Q9NXZ2 648 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 FNIP2Q9P278 1114 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 IL36RNQ9UBH0 155 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 GABBR1Q9UBS5 961 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PRO0461Q9UI25 63 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 RIMKLBQ9ULI2 386 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PCDHA6Q9UN73 950 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 THRAP3Q9Y2W1 955 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP0.62□□□□□ -2.31
VPS35-212ENST00000640313 RNF215Q9Y6U7 377 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 FAM227AF5H4B4 570 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 H3BUI4 141 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PRPF3O43395 683 aaKnown RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 XPOTO43592 962 aaKnown RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 LIASO43766 372 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 SOX30O94993 753 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 CRYAAP02489 173 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ALDH2P05091 517 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 POU2F2P09086 479 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 TMEM225BP0DP42 221 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 FGF5P12034 268 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 HGFP14210 728 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 NPR1P16066 1061 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PDCP20941 246 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 GNLYP22749 145 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ALDH4A1P30038 563 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 RECQLP46063 649 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 AMTP48728 403 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 LUMP51884 338 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 NEK2P51955 445 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PGDP52209 483 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PMS2P54278 862 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 POLE2P56282 527 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 EIF4A1P60842 406 aaKnown RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 RAE1P78406 368 aaKnown RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 BNC1Q01954 994 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ITKQ08881 620 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 NSUN2Q08J23 767 aaKnown RBP eCLIP0.61□□□□□ -2.31
VPS35-212ENST00000640313 DMWDQ09019 674 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 CTBP1Q13363 440 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 SNTA1Q13424 505 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 GAB1Q13480 694 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PIN1Q13526 163 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 GALEQ14376 348 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ZNF267Q14586 743 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 PTPN21Q16825 1174 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PTPROQ16827 1216 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 DUSP6Q16828 381 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 INSCQ1MX18 579 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PLEKHO1Q53GL0 409 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 TCTE1Q5JU00 501 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 EFHC1Q5JVL4 640 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ATAT1Q5SQI0 421 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 EFCAB2Q5VUJ9 269 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 LMBRD2Q68DH5 695 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 GRHL2Q6ISB3 625 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 LRIG3Q6UXM1 1119 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PP632Q6XCG6 107 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 Q6ZSV7 163 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 FOXL2NBQ6ZUU3 175 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 OVCH2Q7RTZ1 564 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 KDELC2Q7Z4H8 507 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 HAPLN4Q86UW8 402 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 P2RY8Q86VZ1 359 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 EPHX4Q8IUS5 362 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PAQR4Q8N4S7 273 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 MAB21L3Q8N8X9 362 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 KDM1BQ8NB78 822 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 PPP1R35Q8TAP8 253 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 FAM76AQ8TAV0 307 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 BICD2Q8TD16 824 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 DIS3LQ8TF46 1054 aaKnown RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 SORCS1Q8WY21 1168 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 RAPGEF4Q8WZA2 1011 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 AKAP1Q92667 903 aaKnown RBP eCLIP0.61□□□□□ -2.31
VPS35-212ENST00000640313 CHMP4CQ96CF2 233 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 HOOK2Q96ED9 719 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 MVB12AQ96EY5 273 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ZDHHC12Q96GR4 267 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ZNF668Q96K58 619 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 TAAR9Q96RI9 348 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 NUP88Q99567 741 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 LITAFQ99732 161 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 TRIM54Q9BYV2 358 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 CDH19Q9H159 772 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 MAGEH1Q9H213 219 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 SAP30LQ9HAJ7 183 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 SMURF2Q9HAU4 748 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 IL21RQ9HBE5 538 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 ATP6V0A4Q9HBG4 840 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 FAM120CQ9NX05 1096 aaKnown RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 CPNE7Q9UBL6 633 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 RGS17Q9UGC6 210 aaPredicted RBP0.61□□□□□ -2.31
VPS35-212ENST00000640313 SPEF1Q9Y4P9 236 aa0.61□□□□□ -2.31
VPS35-212ENST00000640313 CROCCQ5TZA2 2017 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 COL15A1P39059 1388 aa0.6□□□□□ -2.31
VPS35-212ENST00000640313 IGLV5-37A0A075B6J1 123 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms