RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 USP25Q9UHP3 1055 aa15.59■□□□□ 0.09
SYNE2-228ENST00000639659 TTC34A8MYJ7 566 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 ACSL4O60488 711 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 RHOBTB3O94955 611 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 MOCS2O96007 188 aaPredicted RBP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 MYL1P05976 194 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 CD38P28907 300 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 TBX4P57082 545 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 DAOAP59103 153 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 YWHAEP62258 255 aaKnown RBP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 RPS24P62847 133 aaKnown RBP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 SFSWAPQ12872 951 aaKnown RBP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 TARDBPQ13148 414 aaKnown RBP eCLIP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 CUL2Q13617 745 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 NFIL3Q16649 462 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 RNF219Q5W0B1 726 aaPredicted RBP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 MMS22LQ6ZRQ5 1243 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 USP30Q70CQ3 517 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 KIAA0907Q7Z7F0 614 aaPredicted RBP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 HSCBQ8IWL3 235 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 UNC45BQ8IWX7 931 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 CFAP52Q8N1V2 620 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 OR14C36Q8NHC7 312 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 SLC39A7Q92504 469 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 SERAC1Q96JX3 654 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 PRICKLE1Q96MT3 831 aaPredicted RBP15.58■□□□□ 0.08
SYNE2-228ENST00000639659 EBF2Q9HAK2 575 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 STOML2Q9UJZ1 356 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 RCOR1Q9UKL0 485 aa15.58■□□□□ 0.08
SYNE2-228ENST00000639659 E9PAM4 449 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 M0QYV0 167 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 WNT9AO14904 365 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CETN3O15182 167 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 RRP8O43159 456 aaKnown RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 TLX3O43711 291 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CENPBP07199 599 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 SETSIPP0DME0 302 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CMA1P23946 247 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 SLC8A1P32418 973 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 EIF2S3P41091 472 aaKnown RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CTSOP43234 321 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 ARRB1P49407 418 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 HNRNPA1L2Q32P51 320 aaKnown RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CBWD6Q4V339 395 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 FAM133BQ5BKY9 247 aaKnown RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CBWD3Q5JTY5 395 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CBWD5Q5RIA9 395 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 NUGGCQ68CJ6 796 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 ATL3Q6DD88 541 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 GUF1Q8N442 669 aaKnown RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 OR2T34Q8NGX1 318 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CLEC4CQ8WTT0 213 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 MYO19Q96H55 970 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 SPATA32Q96LK8 384 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 FCRL3Q96P31 734 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 MIS12Q9H081 205 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 CNGB3Q9NQW8 809 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 SCML1Q9UN30 329 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 PCDHGA1Q9Y5H4 931 aa15.57■□□□□ 0.08
SYNE2-228ENST00000639659 COL5A1P20908 1838 aaPredicted RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 NYNRINQ9P2P1 1898 aaKnown RBP15.57■□□□□ 0.08
SYNE2-228ENST00000639659 PAPSS1O43252 624 aaPredicted RBP15.56■□□□□ 0.08
SYNE2-228ENST00000639659 LTFP02788 710 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 ASLP04424 464 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 VDRP11473 427 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 EPHA8P29322 1005 aaPredicted RBP15.56■□□□□ 0.08
SYNE2-228ENST00000639659 ACADVLP49748 655 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 NDUFA8P51970 172 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 ENPEPQ07075 957 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 DPYDQ12882 1025 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 BNIP3Q12983 259 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 KCNJ12Q14500 433 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 SHBQ15464 509 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 SLC45A4Q5BKX6 768 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 PITRM1Q5JRX3 1037 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 NADSYN1Q6IA69 706 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 STK40Q8N2I9 435 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 ZNF557Q8N988 423 aaPredicted RBP15.56■□□□□ 0.08
SYNE2-228ENST00000639659 SAP25Q8TEE9 199 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 MYEOVQ96EZ4 313 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 RPL10LQ96L21 214 aaKnown RBP15.56■□□□□ 0.08
SYNE2-228ENST00000639659 DDX50Q9BQ39 737 aaKnown RBP15.56■□□□□ 0.08
SYNE2-228ENST00000639659 NUCKS1Q9H1E3 243 aaKnown RBP15.56■□□□□ 0.08
SYNE2-228ENST00000639659 INTS6Q9UL03 887 aaKnown RBP15.56■□□□□ 0.08
SYNE2-228ENST00000639659 ERVW-1Q9UQF0 538 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 RAI2Q9Y5P3 530 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 MYLKQ15746 1914 aa15.56■□□□□ 0.08
SYNE2-228ENST00000639659 TBC1D3DA0A087WVF3 549 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 TBC1D3IA0A087WXS9 549 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 TBC1D3EA0A087X179 549 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 TBC1D3KA0A087X1G2 549 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 TBC1D3FA6NER0 549 aaPredicted RBP15.55■□□□□ 0.08
SYNE2-228ENST00000639659 TBC1D3LB9A6J9 549 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 O00370 1275 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 IRAK2O43187 625 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 SDC3O75056 442 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 MOCS3O95396 460 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 CALCAP01258 141 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 IL1BP01584 269 aa15.55■□□□□ 0.08
SYNE2-228ENST00000639659 TBC1D3HP0C7X1 549 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms