RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 EBF2Q9HAK2 575 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 SCML1Q9UN30 329 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 PLXNA2O75051 1894 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 A0A1W2PP55 124 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 ENC1O14682 589 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 MID1O15344 667 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 IRAK2O43187 625 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 RNASEH2AO75792 299 aaKnown RBP20.14■□□□□ 0.81
CLN3-262ENST00000637699 GABBR2O75899 941 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 IGLV3-27P01718 113 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 WNT1P04628 370 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 JUPP14923 745 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 TBX4P57082 545 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 YWHAEP62258 255 aaKnown RBP20.14■□□□□ 0.81
CLN3-262ENST00000637699 CST6Q15828 149 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 HNRNPA1L2Q32P51 320 aaKnown RBP20.14■□□□□ 0.81
CLN3-262ENST00000637699 NUGGCQ68CJ6 796 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 CARNMT1Q8N4J0 409 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 FIBINQ8TAL6 211 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 SKA1Q96BD8 255 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 LMLNQ96KR4 655 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 OMDQ99983 421 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 AASDHPPTQ9NRN7 309 aa20.14■□□□□ 0.81
CLN3-262ENST00000637699 INTS6Q9UL03 887 aaKnown RBP20.14■□□□□ 0.81
CLN3-262ENST00000637699 FAM237AA0A1B0GTK4 181 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 LRRC72A6NJI9 287 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 LDOC1O95751 146 aaPredicted RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 ITGAVP06756 1048 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 ABCB4P21439 1286 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 RPS24P62847 133 aaKnown RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 SFSWAPQ12872 951 aaKnown RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 DNAJC3Q13217 504 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 PKDCCQ504Y2 493 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 NADSYN1Q6IA69 706 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 PMF1Q6P1K2 205 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 MMS22LQ6ZRQ5 1243 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 MMAAQ8IVH4 418 aaKnown RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 SCML4Q8N228 414 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 ZNF557Q8N988 423 aaPredicted RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 HJURPQ8NCD3 748 aaPredicted RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 PIP4K2CQ8TBX8 421 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 CLEC4CQ8WTT0 213 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 TFAP2BQ92481 460 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 MYEOVQ96EZ4 313 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 CNDP2Q96KP4 475 aaKnown RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 MRGPRX3Q96LB0 322 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 PRICKLE1Q96MT3 831 aaPredicted RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 IRX2Q9BZI1 471 aaPredicted RBP20.13■□□□□ 0.81
CLN3-262ENST00000637699 KIAA1257Q9ULG3 409 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 COQ4Q9Y3A0 265 aa20.13■□□□□ 0.81
CLN3-262ENST00000637699 TP53BP1Q12888 1972 aaPredicted RBP20.12■□□□□ 0.81
CLN3-262ENST00000637699 TTC34A8MYJ7 566 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 E9PAM4 449 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 WNT9AO14904 365 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 ASLP04424 464 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 CTSOP43234 321 aaPredicted RBP20.12■□□□□ 0.81
CLN3-262ENST00000637699 ABCG1P45844 678 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 KCNJ12Q14500 433 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 SHBQ15464 509 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 C9orf64Q5T6V5 341 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 LCLAT1Q6UWP7 414 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 CFAP52Q8N1V2 620 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 EID2Q8N6I1 236 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 OR2T34Q8NGX1 318 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 SLC35F5Q8WV83 523 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 IRGQQ8WZA9 623 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 PCDHGA1Q9Y5H4 931 aa20.12■□□□□ 0.81
CLN3-262ENST00000637699 TYW5A2RUC4 315 aaKnown RBP20.11■□□□□ 0.81
CLN3-262ENST00000637699 LTFP02788 710 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 ITPKBP27987 946 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 CD38P28907 300 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 SLC8A1P32418 973 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 HNF1BP35680 557 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 KRT85P78386 507 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 SEMG2Q02383 582 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 CDH18Q13634 790 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 FSCBQ5H9T9 825 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 TMEM270Q6UE05 265 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 CCDC117Q8IWD4 279 aaPredicted RBP20.11■□□□□ 0.81
CLN3-262ENST00000637699 UBR7Q8N806 425 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 SAP25Q8TEE9 199 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 AZIN2Q96A70 460 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 NXPE2Q96DL1 559 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 DDX50Q9BQ39 737 aaKnown RBP20.11■□□□□ 0.81
CLN3-262ENST00000637699 MIS12Q9H081 205 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 GOLPH3LQ9H4A5 285 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 ERVW-1Q9UQF0 538 aa20.11■□□□□ 0.81
CLN3-262ENST00000637699 RFPL3O75679 317 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 ZNF202O95125 648 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 PSMD8P48556 350 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 PITRM1Q5JRX3 1037 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 C6orf118Q5T5N4 469 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 NUCKS1Q9H1E3 243 aaKnown RBP20.1■□□□□ 0.81
CLN3-262ENST00000637699 GDF3Q9NR23 364 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 ADAMTS1Q9UHI8 967 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 SLCO3A1Q9UIG8 710 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 FZD4Q9ULV1 537 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 CEP83Q9Y592 693 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 PCDHB4Q9Y5E5 795 aa20.1■□□□□ 0.81
CLN3-262ENST00000637699 AK5Q9Y6K8 562 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms