RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 PUS7LQ9H0K6 701 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 GPBP1L1Q9HC44 474 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 H0YJX3 145 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 KPNA5O15131 536 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 THRBP10828 461 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 BDNFP23560 247 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 CLK3P49761 638 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ENTPD1P49961 510 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TBCELQ5QJ74 424 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 KLHDC7AQ5VTJ3 777 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ATAD1Q8NBU5 361 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 KCTD14Q9BQ13 255 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ANKRD34BA5PLL1 514 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 DGKIO75912 1065 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PLEKHA8P1O95397 391 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 GLDCP23378 1020 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 RPL10AP62906 217 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 RRP1BQ14684 758 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PYDC2Q56P42 97 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ARSKQ6UWY0 536 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 DPY19L3Q6ZPD9 716 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 FAM20CQ8IXL6 584 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 CHPT1Q8WUD6 406 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 KCNN3Q9UGI6 736 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SYNDIG1LA6NDD5 238 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TRDMT1O14717 391 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TBX10O75333 385 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 RAB5BP61020 215 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TAP1Q03518 808 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 C1DQ13901 141 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 DCUN1D1Q96GG9 259 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TBATAQ96M53 351 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 CADM1Q9BY67 442 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 HMGN1P05114 100 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 MYBPC1Q00872 1141 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SMUG1Q53HV7 270 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 XRRA1Q6P2D8 792 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 MPP5Q8N3R9 675 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 FAR1Q8WVX9 515 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 NACC2Q96BF6 587 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 VCPIP1Q96JH7 1222 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 UGT2B28Q9BY64 529 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 RANBP3Q9H6Z4 567 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 NPAP1Q9NZP6 1156 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 GNEQ9Y223 722 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SNX9Q9Y5X1 595 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 CRTAMO95727 393 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 COX4I1P13073 169 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 COASYQ13057 564 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 RHPN2Q8IUC4 686 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TAGAPQ8N103 731 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PACRGLQ8N7B6 248 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 FAM47BQ8NA70 645 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 HEMGNQ9BXL5 484 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TTYH1Q9H313 450 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF222Q9UK12 451 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 DUOX1Q9NRD9 1551 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 GMDSO60547 372 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TCF4P15884 667 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SERPINB5P36952 375 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 EVA1CP58658 441 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PRKAA1Q13131 559 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 C11orf63Q6NUN7 778 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF574Q6ZN55 896 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 XXYLT1Q8NBI6 393 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ZFP28Q8NHY6 868 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 FBXO25Q8TCJ0 367 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 FIG4Q92562 907 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF696Q9H7X3 374 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SF3B1O75533 1304 aaKnown RBP eCLIP5.05□□□□□ -1.62e-6■■■■■ 111.8
VPS13D-213ENST00000613099 K7ERI5 159 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 TSHRP16473 764 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PSMA2P25787 234 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 NR5A1Q13285 461 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 CNSTQ6PJW8 725 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PAOXQ6QHF9 649 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PTCD3Q96EY7 689 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 MUC13Q9H3R2 512 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 MEIS1O00470 390 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ACSL4O60488 711 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 CENPAP49450 140 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ZNF132P52740 706 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 DEFA6Q01524 100 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ENOSF1Q7L5Y1 443 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 FAM111AQ96PZ2 611 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SSU72Q9NP77 194 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 VPS4BO75351 444 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 WDPCPO95876 746 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 NUDT1P36639 197 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PHKA1P46020 1223 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PCDH1Q08174 1060 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ST3GAL1Q11201 340 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 IFRD2Q12894 506 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 PROSER3Q2NL68 480 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ANKRD26P1Q6NSI1 321 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 RP9Q8TA86 221 aaKnown RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ZSWIM3Q96MP5 696 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 SEPT9Q9UHD8 586 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-213ENST00000613099 ALG6Q9Y672 507 aa5.05□□□□□ -1.6
VPS13D-213ENST00000613099 LOC100506127A0A0U1RQW1 187 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms