RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 STX10O60499 249 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 ASLP04424 464 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 EPB41P11171 864 aaKnown RBP10.35□□□□□ -0.75
LIG1-209ENST00000596104 VDRP11473 427 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 LCP1P13796 627 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 CD19P15391 556 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 ITPKBP27987 946 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 CSKP41240 450 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 ABCG1P45844 678 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 SLC11A2P49281 568 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 ACADVLP49748 655 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 RPS24P62847 133 aaKnown RBP10.35□□□□□ -0.75
LIG1-209ENST00000596104 C9orf64Q5T6V5 341 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 NUGGCQ68CJ6 796 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 LCLAT1Q6UWP7 414 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 MFN1Q8IWA4 741 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 UNC45BQ8IWX7 931 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 DHX40Q8IX18 779 aaKnown RBP10.35□□□□□ -0.75
LIG1-209ENST00000596104 ZNF557Q8N988 423 aaPredicted RBP10.35□□□□□ -0.75
LIG1-209ENST00000596104 KDM1BQ8NB78 822 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 HJURPQ8NCD3 748 aaPredicted RBP10.35□□□□□ -0.75
LIG1-209ENST00000596104 OR2T34Q8NGX1 318 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 ADAM32Q8TC27 787 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 GANCQ8TET4 914 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 SLC35F5Q8WV83 523 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 IRGQQ8WZA9 623 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 TFAP2BQ92481 460 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 TSC1Q92574 1164 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 AZIN2Q96A70 460 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 NXPE2Q96DL1 559 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 CNDP2Q96KP4 475 aaKnown RBP10.35□□□□□ -0.75
LIG1-209ENST00000596104 DCBLD2Q96PD2 775 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 UBL7Q96S82 380 aaPredicted RBP10.35□□□□□ -0.75
LIG1-209ENST00000596104 FAM129BQ96TA1 746 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 ZSWIM1Q9BR11 485 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 STIM2Q9P246 746 aa10.35□□□□□ -0.75
LIG1-209ENST00000596104 GOLGA4Q13439 2230 aaKnown RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 MYH10P35580 1976 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 HELZ2Q9BYK8 2649 aaKnown RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 LRRC72A6NJI9 287 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 EIF4E1BA6NMX2 242 aaKnown RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 CETN3O15182 167 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 TLX3O43711 291 aaPredicted RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 RFPL3O75679 317 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 C1QL1O75973 258 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 LDOC1O95751 146 aaPredicted RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 LTFP02788 710 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 FYNP06241 537 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 ITGAVP06756 1048 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 C1SP09871 688 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 CDK4P11802 303 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 JUPP14923 745 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 CD38P28907 300 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 EPHA8P29322 1005 aaPredicted RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 SLC8A1P32418 973 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 RGS7P49802 495 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 CCR5P51681 352 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 TBX4P57082 545 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 ST8SIA6P61647 398 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 YWHAEP62258 255 aaKnown RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 DNAJC3Q13217 504 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 FSCBQ5H9T9 825 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 PMF1Q6P1K2 205 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 FBXL19Q6PCT2 694 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 KRBA2Q6ZNG9 492 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 MMS22LQ6ZRQ5 1243 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 MMAAQ8IVH4 418 aaKnown RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 SMYD4Q8IYR2 804 aaPredicted RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 AADATQ8N5Z0 425 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 PIP4K2CQ8TBX8 421 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 SKA1Q96BD8 255 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 FCRL2Q96LA5 508 aaPredicted RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 NUCKS1Q9H1E3 243 aaKnown RBP10.34□□□□□ -0.75
LIG1-209ENST00000596104 PRORYQ9H606 182 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 KIAA1257Q9ULG3 409 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 FZD4Q9ULV1 537 aa10.34□□□□□ -0.75
LIG1-209ENST00000596104 ITIH6Q6UXX5 1313 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 TARSL2A2RTX5 802 aaKnown RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 TTC34A8MYJ7 566 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 PIK3R2O00459 728 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 YKT6O15498 198 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 LATO43561 262 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 RNASEH1O60930 286 aaKnown RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 RNASEH2AO75792 299 aaKnown RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 PRB1P04280 392 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 SRPRAP08240 638 aaKnown RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 PAEPP09466 180 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 HNF1BP35680 557 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 EIF2S3P41091 472 aaKnown RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 CTSOP43234 321 aaPredicted RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 RXRGP48443 463 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 ADPRHP54922 357 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 NXPH1P58417 271 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 SFSWAPQ12872 951 aaKnown RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 TARDBPQ13148 414 aaKnown RBP eCLIP10.33□□□□□ -0.761e-7■■■■□ 25.2
LIG1-209ENST00000596104 NNTQ13423 1086 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 RTP5Q14D33 572 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 CNGA2Q16280 664 aa10.33□□□□□ -0.76
LIG1-209ENST00000596104 DCAF17Q5H9S7 520 aaPredicted RBP10.33□□□□□ -0.76
LIG1-209ENST00000596104 MS4A13Q5J8X5 152 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms