RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 HEATR6Q6AI08 1181 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 LRIG3Q6UXM1 1119 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 TMC7Q7Z402 723 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 PPIL6Q8IXY8 311 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 ZNF276Q8N554 614 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 ZCCHC9Q8N567 271 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 NPWQ8N729 165 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 OR2W6PQ8NHA6 318 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 CCDC110Q8TBZ0 833 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 HTR3CQ8WXA8 447 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 TRMT2BQ96GJ1 504 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 KLHL5Q96PQ7 755 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 CDK5RAP1Q96SZ6 601 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 LGMNQ99538 433 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 FOXP3Q9BZS1 431 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 TSPYL1Q9H0U9 437 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 CDC42EP4Q9H3Q1 356 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 SEMA4AQ9H3S1 761 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 PRDM12Q9H4Q4 367 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 ALG13Q9NP73 1137 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 ENTPD7Q9NQZ7 604 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 MAFFQ9ULX9 164 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 SHOC2Q9UQ13 582 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 NR2E3Q9Y5X4 410 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 RAD54BQ9Y620 910 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 NOTCH4Q99466 2003 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 TCRBV7S3A2A0A539 114 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 LINC01553A4QN01 128 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 C5orf60A6NFR6 353 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 E9PAM4 449 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 H0YGN5 161 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 FGF10O15520 208 aaPredicted RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 TGM5O43548 720 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 OPA1O60313 960 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 GCATO75600 419 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 TMEM63AO94886 807 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 ARHGEF15O94989 841 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 SERPINB6P35237 376 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 ATP5C1P36542 298 aaKnown RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 TUBP50607 506 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 MLLT6P55198 1093 aaPredicted RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 BASP1P80723 227 aaKnown RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 GALNT2Q10471 571 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 KCNJ11Q14654 390 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 HSP90B2PQ58FF3 399 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 HECTD3Q5T447 861 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 FAXCQ5TGI0 409 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 RAP1GAP2Q684P5 730 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 DENND2CQ68D51 928 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 CEP128Q6ZU80 1094 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 SPRED2Q7Z698 418 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 DNAJB7Q7Z6W7 309 aaPredicted RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 TADA2BQ86TJ2 420 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 HOOK3Q86VS8 718 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 NAT8LQ8N9F0 302 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 CCNYQ8ND76 341 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 SPPL3Q8TCT6 385 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 DEPDC1BQ8WUY9 529 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 DPF3Q92784 378 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 CELF6Q96J87 481 aaKnown RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 MYRFLQ96LU7 910 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 SH3GL2Q99962 352 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 TCF25Q9BQ70 676 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 C17orf80Q9BSJ5 609 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 NACA2Q9H009 215 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 KLC2Q9H0B6 622 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 PABPC3Q9H361 631 aaKnown RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 CATSPERBQ9H7T0 1116 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 ZNF334Q9HCZ1 680 aaPredicted RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 SAYSD1Q9NPB0 183 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 RAB6BQ9NRW1 208 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 NINJ2Q9NZG7 142 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 SEPT10Q9P0V9 454 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 SLC12A6Q9UHW9 1150 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 DNMT3LQ9UJW3 386 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 VANGL2Q9ULK5 521 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 LZTS1Q9Y250 596 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 HBS1LQ9Y450 684 aaKnown RBP10.82□□□□□ -0.68
SS18-217ENST00000580958 NFS1Q9Y697 457 aa10.82□□□□□ -0.68
SS18-217ENST00000580958 CEP290O15078 2479 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 A0A0A0MRY4 1105 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 GRXCR1A8MXD5 290 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 GOLGA8MH3BSY2 632 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 RNF103O00237 685 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 RIPK2O43353 540 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 COCHO43405 550 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 METTL18O95568 372 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 ADH1AP07327 375 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 MYOGP15173 224 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 MX2P20592 715 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 DNAJB1P25685 340 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 MAGEA4P43358 317 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 KCNQ1P51787 676 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 KPNA1P52294 538 aaPredicted RBP10.81□□□□□ -0.68
SS18-217ENST00000580958 COG7P83436 770 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 CBX1P83916 185 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 FOXK1P85037 733 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 RING1Q06587 406 aa10.81□□□□□ -0.68
SS18-217ENST00000580958 AUHQ13825 339 aaKnown RBP10.81□□□□□ -0.68
SS18-217ENST00000580958 MS4A13Q5J8X5 152 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms