RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 LRRC38Q5VT99 294 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 WSCD1Q658N2 575 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 WDR93Q6P2C0 686 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 SYT13Q7L8C5 426 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 CYP2U1Q7Z449 544 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 TMEM150AQ86TG1 271 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 XYLT1Q86Y38 959 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 KLHL7Q8IXQ5 586 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 IFT20Q8IY31 132 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 DCP1BQ8IZD4 617 aaKnown RBP10.56□□□□□ -0.72
SS18-210ENST00000578700 CPA6Q8N4T0 437 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 NIPA2Q8N8Q9 360 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 KDF1Q8NAX2 398 aaPredicted RBP10.56□□□□□ -0.72
SS18-210ENST00000578700 TSTD1Q8NFU3 115 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 SPPL2BQ8TCT7 592 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 SLC2A14Q8TDB8 520 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 FNIP1Q8TF40 1166 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 CYP2S1Q96SQ9 504 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 KRT12Q99456 494 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 HOMER3Q9NSC5 361 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 EHD2Q9NZN4 543 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 HSFX1Q9UBD0 423 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 RASAL2Q9UJF2 1139 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 CDH9Q9ULB4 789 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 WNT6Q9Y6F9 365 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 LOC400499M0QZD8 3231 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 ASCC3Q8N3C0 2202 aaKnown RBP10.56□□□□□ -0.72
SS18-210ENST00000578700 PCNX2A6NKB5 2137 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 SCN1AP35498 2009 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 ANTXRLA6NF34 631 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 SRRM3A6NNA2 597 aaPredicted RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 E5RJQ4 531 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 CDX4O14627 284 aaPredicted RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 GABRDO14764 452 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 FAM200BP0CF97 657 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 CSH1P0DML2 217 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 CSH2P0DML3 217 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 CEACAM1P13688 526 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 CCDC130P13994 396 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 HMGA1P17096 107 aaKnown RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 BCKDHBP21953 392 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 LMO2P25791 158 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 DDX6P26196 483 aaKnown RBP eCLIP10.55□□□□□ -0.72
SS18-210ENST00000578700 GJC1P36383 396 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 MAPK8P45983 427 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 TSPY1Q01534 308 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 PDE4CQ08493 712 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 NR1H3Q13133 447 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 ZNF211Q13398 564 aaPredicted RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 DDR2Q16832 855 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 PPP1R15BQ5SWA1 713 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 ANO7Q6IWH7 933 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 FBXO38Q6PIJ6 1188 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 ARMCX6Q7L4S7 300 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 TMEM110Q86TL2 294 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 MON1AQ86VX9 555 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 KATNAL2Q8IYT4 538 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 RCOR2Q8IZ40 523 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 CCDC33Q8N5R6 958 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 EXD1Q8NHP7 514 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 ZCCHC14Q8WYQ9 949 aaKnown RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 ALG3Q92685 438 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 KRT35Q92764 455 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 EZH1Q92800 747 aaPredicted RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 ACDQ96AP0 544 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 HSFY1Q96LI6 401 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 HNRNPABQ99729 332 aaKnown RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 SYT15Q9BQS2 421 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 AP1M1Q9BXS5 423 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 SLC4A5Q9BY07 1137 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 DPEP3Q9H4B8 488 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 ANKZF1Q9H8Y5 726 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 KIF9Q9HAQ2 790 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 LRRC4Q9HBW1 653 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 METTL5Q9NRN9 209 aaKnown RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 TMLHEQ9NVH6 421 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 SMARCAL1Q9NZC9 954 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 STIM2Q9P246 746 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 EBF1Q9UH73 591 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 FEZ2Q9UHY8 353 aaPredicted RBP10.55□□□□□ -0.72
SS18-210ENST00000578700 ZMYM5Q9UJ78 669 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 PCDHB5Q9Y5E4 795 aa10.55□□□□□ -0.72
SS18-210ENST00000578700 XPO1O14980 1071 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 MAP3K13O43283 966 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 SART1O43290 800 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 HYAL3O43820 417 aaPredicted RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 KRT1P04264 644 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 CYP11A1P05108 521 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 PYGMP11217 842 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 H2AFXP16104 143 aaPredicted RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 GPD1P21695 349 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 SDC4P31431 198 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 CHRNA3P32297 505 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 RFC1P35251 1148 aaPredicted RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 SCNN1AP37088 669 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 RGS7P49802 495 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 COPS2P61201 443 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 RPL7AP62424 266 aaKnown RBP10.54□□□□□ -0.72
SS18-210ENST00000578700 SLC6A3Q01959 620 aa10.54□□□□□ -0.72
SS18-210ENST00000578700 DHX34Q14147 1143 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms