RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 GJC1P36383 396 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 MAPK8P45983 427 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 TSPY1Q01534 308 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 PDE4CQ08493 712 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 NR1H3Q13133 447 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 ZNF211Q13398 564 aaPredicted RBP10.55□□□□□ -0.72
SS18-207ENST00000577636 DDR2Q16832 855 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 PPP1R15BQ5SWA1 713 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 ANO7Q6IWH7 933 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 FBXO38Q6PIJ6 1188 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 ARMCX6Q7L4S7 300 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 TMEM110Q86TL2 294 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 MON1AQ86VX9 555 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 KATNAL2Q8IYT4 538 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 RCOR2Q8IZ40 523 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 CCDC33Q8N5R6 958 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 EXD1Q8NHP7 514 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 ZCCHC14Q8WYQ9 949 aaKnown RBP10.55□□□□□ -0.72
SS18-207ENST00000577636 ALG3Q92685 438 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 KRT35Q92764 455 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 EZH1Q92800 747 aaPredicted RBP10.55□□□□□ -0.72
SS18-207ENST00000577636 ACDQ96AP0 544 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 HSFY1Q96LI6 401 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 HNRNPABQ99729 332 aaKnown RBP10.55□□□□□ -0.72
SS18-207ENST00000577636 SYT15Q9BQS2 421 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 AP1M1Q9BXS5 423 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 SLC4A5Q9BY07 1137 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 DPEP3Q9H4B8 488 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 ANKZF1Q9H8Y5 726 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 KIF9Q9HAQ2 790 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 LRRC4Q9HBW1 653 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 METTL5Q9NRN9 209 aaKnown RBP10.55□□□□□ -0.72
SS18-207ENST00000577636 TMLHEQ9NVH6 421 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 SMARCAL1Q9NZC9 954 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 STIM2Q9P246 746 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 EBF1Q9UH73 591 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 FEZ2Q9UHY8 353 aaPredicted RBP10.55□□□□□ -0.72
SS18-207ENST00000577636 ZMYM5Q9UJ78 669 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 PCDHB5Q9Y5E4 795 aa10.55□□□□□ -0.72
SS18-207ENST00000577636 XPO1O14980 1071 aaKnown RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 MAP3K13O43283 966 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 SART1O43290 800 aaKnown RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 HYAL3O43820 417 aaPredicted RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 KRT1P04264 644 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 CYP11A1P05108 521 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 PYGMP11217 842 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 H2AFXP16104 143 aaPredicted RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 GPD1P21695 349 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 SDC4P31431 198 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 CHRNA3P32297 505 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 RFC1P35251 1148 aaPredicted RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 SCNN1AP37088 669 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 RGS7P49802 495 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 COPS2P61201 443 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 RPL7AP62424 266 aaKnown RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 SLC6A3Q01959 620 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 DHX34Q14147 1143 aaKnown RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 PKDCCQ504Y2 493 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 MDH1BQ5I0G3 518 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 EFHC1Q5JVL4 640 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 PMS2CLQ68D20 193 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 POLNQ7Z5Q5 900 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 SIX6OS1Q8N1H7 587 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 ARL14EPQ8N8R7 260 aaPredicted RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 C2orf15Q8WU43 125 aaKnown RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 SLC35F5Q8WV83 523 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 HNRNPLLQ8WVV9 542 aaKnown RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 RLN3Q8WXF3 142 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 ATP2A3Q93084 1043 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 ACBD6Q9BR61 282 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 CNPY3Q9BT09 278 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 LRRC1Q9BTT6 524 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 DUSP16Q9BY84 665 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 TRIM7Q9C029 511 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 RAB17Q9H0T7 212 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 LINC00597Q9H2U6 94 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.54□□□□□ -0.72
SS18-207ENST00000577636 CYTH4Q9UIA0 394 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 TMEM59LQ9UK28 342 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 RAB21Q9UL25 225 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 LHX6Q9UPM6 363 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 USP24Q9UPU5 2620 aa10.54□□□□□ -0.72
SS18-207ENST00000577636 UTP11Q9Y3A2 253 aaKnown RBP10.54□□□□□ -0.72
SS18-207ENST00000577636 SPAG17Q6Q759 2223 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 TRAV19A0A0A6YYK7 116 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 TCRBV5S1A1TA0A578 114 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 ATP8B1O43520 1251 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 PHF2O75151 1096 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 FBXO21O94952 628 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 HEXIM1O94992 359 aaKnown RBP10.53□□□□□ -0.72
SS18-207ENST00000577636 GJB6O95452 261 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 CKMP06732 381 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 USP17L7P0C7H9 530 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 LCP1P13796 627 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 PDGFRAP16234 1089 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 CSRP1P21291 193 aaKnown RBP10.53□□□□□ -0.72
SS18-207ENST00000577636 ACAT1P24752 427 aaKnown RBP10.53□□□□□ -0.72
SS18-207ENST00000577636 CYP2F1P24903 491 aa10.53□□□□□ -0.72
SS18-207ENST00000577636 PLA2G4AP47712 749 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms