RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 RSAD2Q8WXG1 361 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 MUL1Q969V5 352 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 DACT3Q96B18 629 aaPredicted RBP6.53□□□□□ -1.36
VPS53-212ENST00000572259 HIST1H2AHQ96KK5 128 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 TCEANC2Q96MN5 208 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 TAAR1Q96RJ0 339 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 HIST1H2AJQ99878 128 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 WDR11Q9BZH6 1224 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 TMEM168Q9H0V1 697 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 PSTPIP2Q9H939 334 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 UPF2Q9HAU5 1272 aaKnown RBP6.53□□□□□ -1.36
VPS53-212ENST00000572259 TRPV4Q9HBA0 871 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 KIF17Q9P2E2 1029 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 SAE1Q9UBE0 346 aaPredicted RBP6.53□□□□□ -1.36
VPS53-212ENST00000572259 Q9UFV3 132 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 MAGEL2Q9UJ55 1249 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 CDC42EP3Q9UKI2 254 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 SLC39A10Q9ULF5 831 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 PCDHB6Q9Y5E3 794 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 ELP1O95163 1332 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 MROH7Q68CQ1 1323 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 TRIOBPQ9H2D6 2365 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 C17orf113A0A1B0GUU1 675 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 PI4K2BG5E9Z4 385 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 RTCAO00442 366 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 HNRNPDLO14979 420 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 PHGDHO43175 533 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 CUTAO60888 179 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 TBCAO75347 108 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 PLEKHA8P1O95397 391 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 PFKMP08237 780 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 TXNP10599 105 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 P4HA1P13674 534 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 ZNF28P17035 718 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 RXRAP19793 462 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 IL11P20809 199 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 EDNRBP24530 442 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 CST5P28325 142 aaPredicted RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 ATP5DP30049 168 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 CCND2P30279 289 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 HOXD13P35453 343 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 ACTN2P35609 894 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 KCNQ1P51787 676 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 LGALS4P56470 323 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 RAB1AP62820 205 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 MRPS35P82673 323 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 MRPS9P82933 396 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 GHRHRQ02643 423 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 SPIDRQ14159 915 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 PTK2BQ14289 1009 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 ZNF124Q15973 351 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 DUSP28Q4G0W2 176 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 VWA3BQ502W6 1294 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 ODF2Q5BJF6 829 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 PITRM1Q5JRX3 1037 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 LRCH2Q5VUJ6 765 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 TCERG1LQ5VWI1 586 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 MCTP2Q6DN12 878 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 SLC39A5Q6ZMH5 540 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 SEPT14Q6ZU15 432 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 BTN2A1Q7KYR7 527 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 HEATR3Q7Z4Q2 680 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 BMP8AQ7Z5Y6 402 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 TLK2Q86UE8 772 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 FBXO16Q8IX29 292 aaPredicted RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 ADGRG2Q8IZP9 1017 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 CCAR2Q8N163 923 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 CARFQ8N187 725 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 KLHDC9Q8NEP7 349 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 TOR1AIP2Q8NFQ8 470 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 GAB3Q8WWW8 586 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 ZCCHC14Q8WYQ9 949 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 TBC1D5Q92609 795 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 ZNF274Q96GC6 653 aaPredicted RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 CNDP2Q96KP4 475 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 LBHD1Q9BQE6 289 aaPredicted RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 PDCD2LQ9BRP1 358 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 AGXT2Q9BYV1 514 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 EDEM3Q9BZQ6 932 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 PITHD1Q9GZP4 211 aaPredicted RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 UPF3AQ9H1J1 476 aaKnown RBP6.52□□□□□ -1.37
VPS53-212ENST00000572259 C2orf40Q9H1Z8 148 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 KCTD10Q9H3F6 313 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 GRPEL1Q9HAV7 217 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 PXMP2Q9NR77 195 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 TBK1Q9UHD2 729 aa6.52□□□□□ -1.37
VPS53-212ENST00000572259 LCTP09848 1927 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 A0A0A6YYJ9 748 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 SH3D21A4FU49 640 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 ISM1B1AKI9 464 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 TRIM38O00635 465 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 NRP2O60462 931 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 B3GALNT1O75752 331 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 CDKL5O76039 1030 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 GH1P01241 217 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 ASGR1P07306 291 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 GNA11P29992 359 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 HOXA13P31271 388 aaPredicted RBP6.51□□□□□ -1.37
VPS53-212ENST00000572259 ABCD1P33897 745 aa6.51□□□□□ -1.37
VPS53-212ENST00000572259 POLD2P49005 469 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms