RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 PPP6R2O75170 966 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 SIN3BO75182 1162 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 YEATS4O95619 227 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 AFPP02771 609 aaKnown RBP11.53□□□□□ -0.56
VPS53-207ENST00000570510 MAT2AP31153 395 aaKnown RBP11.53□□□□□ -0.56
VPS53-207ENST00000570510 STAT6P42226 847 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 PSMD8P48556 350 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 NASPP49321 788 aaPredicted RBP11.53□□□□□ -0.56
VPS53-207ENST00000570510 KIF11P52732 1056 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 EHHADHQ08426 723 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 NCOA4Q13772 614 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 BECN1Q14457 450 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 SLC39A14Q15043 492 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 CCDC73Q6ZRK6 1079 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 ADIPOR2Q86V24 386 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 IQCHQ86VS3 1027 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 UNC93AQ86WB7 457 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 CRYBG2Q8N1P7 616 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 ZNF557Q8N988 423 aaPredicted RBP11.53□□□□□ -0.56
VPS53-207ENST00000570510 XXYLT1Q8NBI6 393 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 OR4C6Q8NH72 309 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 SLC46A1Q96NT5 459 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 MTG2Q9H4K7 406 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 PNPLA8Q9NP80 782 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 ATP6V1DQ9Y5K8 247 aa11.53□□□□□ -0.56
VPS53-207ENST00000570510 A0A1B0GVM2 712 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 TYW5A2RUC4 315 aaKnown RBP11.52□□□□□ -0.57
VPS53-207ENST00000570510 NEMP2A6NFY4 417 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 CLIC2O15247 247 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 SUV39H1O43463 412 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 ADH1BP00325 375 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 GP1BAP07359 652 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 CKMT1AP12532 417 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 GOT1P17174 413 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 AP3M2P53677 418 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 SLC8A3P57103 927 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 SGSM1Q2NKQ1 1148 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 HNRNPA1L2Q32P51 320 aaKnown RBP11.52□□□□□ -0.57
VPS53-207ENST00000570510 ARL13BQ3SXY8 428 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 CDCP2Q5VXM1 449 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 RNF219Q5W0B1 726 aaPredicted RBP11.52□□□□□ -0.57
VPS53-207ENST00000570510 SCD5Q86SK9 330 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 SPATS2Q86XZ4 545 aaKnown RBP11.52□□□□□ -0.57
VPS53-207ENST00000570510 EXD3Q8N9H8 876 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 RNF139Q8WU17 664 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 ZNF516Q92618 1163 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 GRAMD1AQ96CP6 724 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 KLHDC7BQ96G42 594 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 PANK2Q9BZ23 570 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 VRTNQ9H8Y1 702 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 CFAP45Q9UL16 551 aa11.52□□□□□ -0.57
VPS53-207ENST00000570510 HHLA1C9JL84 531 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 EXOC3O60645 756 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 IL1BP01584 269 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 ASLP04424 464 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 SLFN14P0C7P3 912 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 ZSCAN22P10073 491 aaPredicted RBP11.51□□□□□ -0.57
VPS53-207ENST00000570510 C7P10643 843 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 C5AR1P21730 350 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 DGKAP23743 735 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 NUDT1P36639 197 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 AFMP43652 599 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 ADPRHP54922 357 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 YWHAGP61981 247 aaKnown RBP eCLIP11.51□□□□□ -0.57
VPS53-207ENST00000570510 TLE1Q04724 770 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 ISXQ2M1V0 245 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 POM121L1PQ3SYA9 428 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 ADGRF1Q5T601 910 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.51□□□□□ -0.57
VPS53-207ENST00000570510 KANSL1Q7Z3B3 1105 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 MFN1Q8IWA4 741 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 SLC25A45Q8N413 288 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 EXTL1Q92935 676 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 ELMO3Q96BJ8 720 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 NT5C1AQ9BXI3 368 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 LRRC27Q9C0I9 530 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 SDCBP2Q9H190 292 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 USP29Q9HBJ7 922 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 AGPAT3Q9NRZ7 376 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 STARD5Q9NSY2 213 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 OLA1Q9NTK5 396 aaKnown RBP11.51□□□□□ -0.57
VPS53-207ENST00000570510 DMTF1Q9Y222 760 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 UBE4BO95155 1302 aa11.51□□□□□ -0.57
VPS53-207ENST00000570510 USP9XQ93008 2570 aaPredicted RBP11.51□□□□□ -0.57
VPS53-207ENST00000570510 EDDM13A0A1B0GTR0 161 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 FRMD3A2A2Y4 597 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 TARSL2A2RTX5 802 aaKnown RBP11.5□□□□□ -0.57
VPS53-207ENST00000570510 PRAMEF26H0Y7S4 382 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 TBL1XO60907 577 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 TNFSF15O95150 251 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 MOCS3O95396 460 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 THEGLP0DJG4 465 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 CD70P32970 193 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 NNMTP40261 264 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 SETMARQ53H47 684 aaPredicted RBP11.5□□□□□ -0.57
VPS53-207ENST00000570510 IGF2-ASQ6U949 168 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 NELFCDQ8IXH7 590 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 FAM217AQ8IXS0 508 aa11.5□□□□□ -0.57
VPS53-207ENST00000570510 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.5□□□□□ -0.57
VPS53-207ENST00000570510 ZSCAN1Q8NBB4 408 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms