RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ASB5Q8WWX0 329 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 IGFBPL1Q8WX77 278 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 MED30Q96HR3 178 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 REXO5Q96IC2 774 aaKnown RBP3.26□□□□□ -1.89
VPS35-207ENST00000568191 PAAF1Q9BRP4 392 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ISCUQ9H1K1 167 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 MYLK2Q9H1R3 596 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 GJB4Q9NTQ9 266 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 PCDHA7Q9UN72 937 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 PROCRQ9UNN8 238 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ICKQ9UPZ9 632 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 LMTK3Q96Q04 1460 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3DA0A087WVF3 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3IA0A087WXS9 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3EA0A087X179 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3KA0A087X1G2 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 FAM234BA2RU67 622 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3BA6NDS4 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3FA6NER0 549 aaPredicted RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 OR6C75A6NL08 312 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 FOXO6A8MYZ6 492 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3LB9A6J9 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TNFRSF13BO14836 293 aaPredicted RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 MDM4O15151 490 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 MSI1O43347 362 aaKnown RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 SLC28A2O43868 658 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 NTSR2O95665 410 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 CYP1A2P05177 515 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 FGF2P09038 288 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 HOXC6P09630 235 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3HP0C7X1 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 HARSP12081 509 aaKnown RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 TNFSF4P23510 183 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 EEF1GP26641 437 aaKnown RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 CHRNA5P30532 468 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 GRK5P34947 590 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 DSC1Q08554 894 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TRAF2Q12933 501 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 Q5PR19 223 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 WASHC2DQ5SRD0 308 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 OTUD1Q5VV17 481 aaPredicted RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3GQ6DHY5 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3CQ6IPX1 549 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 MSANTD2Q6P1R3 559 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 RINLQ6ZS11 566 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 C18orf65Q6ZTR6 163 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D3Q8IZP1 549 aaPredicted RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 SLC22A17Q8WUG5 538 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 NPIPB3Q92617 1050 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 EME1Q96AY2 570 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 MSI2Q96DH6 328 aaKnown RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 ZNF479Q96JC4 524 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 SEZ6LQ9BYH1 1024 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 KCNK9Q9NPC2 374 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 KRCC1Q9NPI7 259 aaPredicted RBP3.25□□□□□ -1.89
VPS35-207ENST00000568191 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.25□□□□□ -1.89
VPS35-207ENST00000568191 MYO6Q9UM54 1294 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 DTNAQ9Y4J8 743 aa3.25□□□□□ -1.89
VPS35-207ENST00000568191 A0A0G2JK05 382 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 GXYLT2A0PJZ3 443 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 SAC3D1A6NKF1 404 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 A6NNC1 897 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 C4orf47A7E2U8 309 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 ALDOCP09972 364 aaKnown RBP3.24□□□□□ -1.89
VPS35-207ENST00000568191 TRIM27P14373 513 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 HOXB2P14652 356 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 RFX2P48378 723 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 LTBQ06643 244 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 PMS2P11Q13670 270 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 AAK1Q2M2I8 961 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 IZUMO3Q5VZ72 239 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 NUGGCQ68CJ6 796 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 RINT1Q6NUQ1 792 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 C16orf89Q6UX73 402 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 TRABD2AQ86V40 505 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 MORC1Q86VD1 984 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 SPATA2LQ8IUW3 424 aaPredicted RBP3.24□□□□□ -1.89
VPS35-207ENST00000568191 DCP1BQ8IZD4 617 aaKnown RBP3.24□□□□□ -1.89
VPS35-207ENST00000568191 C7orf57Q8NEG2 295 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 PJA1Q8NG27 643 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 ELP5Q8TE02 316 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 NUDCD2Q8WVJ2 157 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 OIT3Q8WWZ8 545 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 TNIP3Q96KP6 325 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 C8orf48Q96LL4 319 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 CCDC138Q96M89 665 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 ZNF347Q96SE7 839 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 TMEM120AQ9BXJ8 343 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.24□□□□□ -1.89
VPS35-207ENST00000568191 CDT1Q9H211 546 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 CCDC134Q9H6E4 229 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 CATSPERBQ9H7T0 1116 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 SIRT3Q9NTG7 399 aaPredicted RBP3.24□□□□□ -1.89
VPS35-207ENST00000568191 RNF146Q9NTX7 359 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 GEMIN8Q9NWZ8 242 aaKnown RBP3.24□□□□□ -1.89
VPS35-207ENST00000568191 NCKIPSDQ9NZQ3 722 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 TBC1D14Q9P2M4 693 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 ZBTB1Q9Y2K1 713 aa3.24□□□□□ -1.89
VPS35-207ENST00000568191 SLC4A4Q9Y6R1 1079 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms