RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GJB7Q6PEY0 223 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 IL27RAQ6UWB1 636 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 CREBRFQ8IUR6 639 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 SNX19Q92543 992 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 FAM81BQ96LP2 452 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 RSPH9Q9H1X1 276 aaPredicted RBP16.66■□□□□ 0.26
CLN3-229ENST00000567963 MTG2Q9H4K7 406 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 THAP9Q9H5L6 903 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 IL21RQ9HBE5 538 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 XPO7Q9UIA9 1087 aaKnown RBP16.66■□□□□ 0.26
CLN3-229ENST00000567963 KLK13Q9UKR3 277 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.66■□□□□ 0.26
CLN3-229ENST00000567963 MSRB2Q9Y3D2 182 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 SLCO1B1Q9Y6L6 691 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 FAM221BA6H8Z2 402 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 TMEM8BA6NDV4 472 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 SEMA4FO95754 770 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 CER1O95813 267 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 MOCS2O96007 188 aaPredicted RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 IGLV3-25P01717 112 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 ASLP04424 464 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 ZNF883P0CG24 379 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 SLC9A1P19634 815 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 MATKP42679 507 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 CSNK1EP49674 416 aaKnown RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 AFF3P51826 1226 aaKnown RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 EIF4EBP2Q13542 120 aaPredicted RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 CDH18Q13634 790 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 CAMK4Q16566 473 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 HLA-BQ31612 363 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 HNRNPA1L2Q32P51 320 aaKnown RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 TTC31Q49AM3 519 aaPredicted RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 ZC3H12AQ5D1E8 599 aaKnown RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 ZNF776Q68DI1 518 aaPredicted RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 MMS22LQ6ZRQ5 1243 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 CCDC117Q8IWD4 279 aaPredicted RBP16.65■□□□□ 0.26
CLN3-229ENST00000567963 CHCHD4Q8N4Q1 142 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 KDM1BQ8NB78 822 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 BIRC7Q96CA5 298 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 MRGPRX3Q96LB0 322 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 SGK2Q9HBY8 427 aa16.65■□□□□ 0.26
CLN3-229ENST00000567963 A0A1B0GVT2 93 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 BECN2A8MW95 431 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 CBFA2T3O75081 653 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 LUC7L3O95232 432 aaKnown RBP16.64■□□□□ 0.25
CLN3-229ENST00000567963 TRUB2O95900 331 aaKnown RBP16.64■□□□□ 0.25
CLN3-229ENST00000567963 APOEP02649 317 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 PDCLQ13371 301 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 ARID5BQ14865 1188 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 PITRM1Q5JRX3 1037 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 DBX2Q6ZNG2 339 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 RAB44Q7Z6P3 723 aaPredicted RBP16.64■□□□□ 0.25
CLN3-229ENST00000567963 LGI2Q8N0V4 545 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 WDTC1Q8N5D0 677 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 BTN2A3PQ96KV6 586 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 OSGEPQ9NPF4 335 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 TM7SF3Q9NS93 570 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 KIAA1522Q9P206 1035 aaPredicted RBP16.64■□□□□ 0.25
CLN3-229ENST00000567963 APEX2Q9UBZ4 518 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 TJP2Q9UDY2 1190 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 SCML1Q9UN30 329 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 ERVW-1Q9UQF0 538 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 DMXL2Q8TDJ6 3036 aa16.64■□□□□ 0.25
CLN3-229ENST00000567963 SIN3BO75182 1162 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 MOCS3O95396 460 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 SRPRAP08240 638 aaKnown RBP16.63■□□□□ 0.25
CLN3-229ENST00000567963 TACR2P21452 398 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 USP8P40818 1118 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 PITX1P78337 314 aaPredicted RBP16.63■□□□□ 0.25
CLN3-229ENST00000567963 APBA1Q02410 837 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 TAF5Q15542 800 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 ARHGAP44Q17R89 818 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 C9orf64Q5T6V5 341 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 RAP1GAP2Q684P5 730 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 GBP6Q6ZN66 633 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 USP30Q70CQ3 517 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 IRF2BP1Q8IU81 584 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-229ENST00000567963 PCOLCE2Q9UKZ9 415 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 NCKAP1Q9Y2A7 1128 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 FNDC3AQ9Y2H6 1198 aaKnown RBP16.63■□□□□ 0.25
CLN3-229ENST00000567963 FREM2Q5SZK8 3169 aa16.63■□□□□ 0.25
CLN3-229ENST00000567963 TARSL2A2RTX5 802 aaKnown RBP16.62■□□□□ 0.25
CLN3-229ENST00000567963 TTC34A8MYJ7 566 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 KCNU1A8MYU2 1149 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 RNASEH1O60930 286 aaKnown RBP16.62■□□□□ 0.25
CLN3-229ENST00000567963 FSBPO95073 299 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 CD27P26842 260 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 PON1P27169 355 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 CTSOP43234 321 aaPredicted RBP16.62■□□□□ 0.25
CLN3-229ENST00000567963 UBE2HP62256 183 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 ECT2LQ008S8 904 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 EXOC3L4Q17RC7 722 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 GLRX5Q86SX6 157 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 CHSY1Q86X52 802 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 DHX40Q8IX18 779 aaKnown RBP16.62■□□□□ 0.25
CLN3-229ENST00000567963 APCDD1Q8J025 514 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 SETD7Q8WTS6 366 aaKnown RBP16.62■□□□□ 0.25
CLN3-229ENST00000567963 SHC3Q92529 594 aa16.62■□□□□ 0.25
CLN3-229ENST00000567963 CPXM1Q96SM3 734 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms