RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ZNF564Q8TBZ8 553 aaPredicted RBP20.18■□□□□ 0.82
CLN3-225ENST00000566824 USP33Q8TEY7 942 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 SORCS1Q8WY21 1168 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 NTAN1Q96AB6 310 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 C1orf74Q96LT6 269 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 BAG1Q99933 345 aaPredicted RBP20.18■□□□□ 0.82
CLN3-225ENST00000566824 SLC2A11Q9BYW1 496 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 IRX2Q9BZI1 471 aaPredicted RBP20.18■□□□□ 0.82
CLN3-225ENST00000566824 EPN1Q9Y6I3 576 aaPredicted RBP20.18■□□□□ 0.82
CLN3-225ENST00000566824 MUC6Q6W4X9 2439 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 WDFY4Q6ZS81 3184 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 RCCD1A6NED2 376 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 DRGXA6NNA5 263 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 EIF3CLB5ME19 914 aaKnown RBP20.17■□□□□ 0.82
CLN3-225ENST00000566824 SRGAP2O75044 1071 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 LUC7L3O95232 432 aaKnown RBP20.17■□□□□ 0.82
CLN3-225ENST00000566824 NDUFA10O95299 355 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 IL1R2P27930 398 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 TIE1P35590 1138 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 MAGEA1P43355 309 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 TNFRSF4P43489 277 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 SCAPQ12770 1279 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 LMAN2Q12907 356 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 RABGAP1LQ5R372 815 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 MANEALQ5VSG8 457 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 EGFLAMQ63HQ2 1017 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 TXNRD3NBQ6F5E7 133 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 KIAA0907Q7Z7F0 614 aaPredicted RBP20.17■□□□□ 0.82
CLN3-225ENST00000566824 SLFN11Q7Z7L1 901 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 MFN1Q8IWA4 741 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 CCDC33Q8N5R6 958 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 ACRBPQ8NEB7 543 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 FIBINQ8TAL6 211 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 SLC35G2Q8TBE7 412 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 ACOX2Q99424 681 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 EIF3CQ99613 913 aaKnown RBP20.17■□□□□ 0.82
CLN3-225ENST00000566824 OSBPL2Q9H1P3 480 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 SPATA6Q9NWH7 488 aaPredicted RBP20.17■□□□□ 0.82
CLN3-225ENST00000566824 OR12D3Q9UGF7 316 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 GGA2Q9UJY4 613 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 INTS6Q9UL03 887 aaKnown RBP20.17■□□□□ 0.82
CLN3-225ENST00000566824 PCDHA13Q9Y5I0 950 aa20.17■□□□□ 0.82
CLN3-225ENST00000566824 MUC22E2RYF6 1773 aaPredicted RBP20.16■□□□□ 0.82
CLN3-225ENST00000566824 IGLV3-10A0A075B6K4 115 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 SATB1Q01826 763 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 ARL13BQ3SXY8 428 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 FUT11Q495W5 492 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 CXorf57Q6NSI4 855 aaKnown RBP20.16■□□□□ 0.82
CLN3-225ENST00000566824 ADIPOR2Q86V24 386 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 SYNPOQ8N3V7 929 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 ALLCQ8N6M5 410 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLN3-225ENST00000566824 PRSS33Q8NF86 280 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 EXOC4Q96A65 974 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 SNRNP25Q9BV90 132 aaKnown RBP20.16■□□□□ 0.82
CLN3-225ENST00000566824 TMEM51Q9NW97 253 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 ZNF212Q9UDV6 495 aa20.16■□□□□ 0.82
CLN3-225ENST00000566824 A0A0U1RQJ8 604 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 H0Y626 953 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 PABPC1P11940 636 aaKnown RBP20.15■□□□□ 0.82
CLN3-225ENST00000566824 HNRNPLP14866 589 aaKnown RBP eCLIP20.15■□□□□ 0.82
CLN3-225ENST00000566824 CYLC1P35663 651 aaPredicted RBP20.15■□□□□ 0.82
CLN3-225ENST00000566824 WASP42768 502 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 MTA1Q13330 715 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 FBXO43Q4G163 708 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 TSSK4Q6SA08 328 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 ANKS1BQ7Z6G8 1248 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 APCDD1Q8J025 514 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 NIPA2Q8N8Q9 360 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 IL17RCQ8NAC3 791 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 ATRIPQ8WXE1 791 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 UVRAGQ9P2Y5 699 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 IP6K2Q9UHH9 426 aa20.15■□□□□ 0.82
CLN3-225ENST00000566824 A0A1B0GVM2 712 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 TCAF2A6NFQ2 919 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 TMEM110-MUSTN1A8MSY1 372 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 CHURC1-FNTBB4DL54 471 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 SGK1O00141 431 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 GALR2O43603 387 aaPredicted RBP20.14■□□□□ 0.81
CLN3-225ENST00000566824 ADAM23O75077 832 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 RNF8O76064 485 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 LRIG2O94898 1065 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 KLF8O95600 359 aaPredicted RBP20.14■□□□□ 0.81
CLN3-225ENST00000566824 MZF1P28698 734 aaPredicted RBP20.14■□□□□ 0.81
CLN3-225ENST00000566824 MAGEA9P43362 315 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 NRG1Q02297 640 aaPredicted RBP20.14■□□□□ 0.81
CLN3-225ENST00000566824 SEMA3BQ13214 749 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 CDH18Q13634 790 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 CHST9Q7L1S5 443 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 TFAP2DQ7Z6R9 452 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 C1orf210Q8IVY1 113 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 SPEM1Q8N4L4 309 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 ERLEC1Q96DZ1 483 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 KCTD15Q96SI1 283 aaPredicted RBP20.14■□□□□ 0.81
CLN3-225ENST00000566824 DESI2Q9BSY9 194 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 NDFIP2Q9NV92 336 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 ELOVL2Q9NXB9 296 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 INTUQ9ULD6 942 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 USP18Q9UMW8 372 aa20.14■□□□□ 0.81
CLN3-225ENST00000566824 AP4E1Q9UPM8 1137 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms