RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	RASGRP2	Q7LDG7	609 aa		5	□□□□□ -1.61
CHD9-215	ENST00000565442	ANKS1B	Q7Z6G8	1248 aa		5	□□□□□ -1.61
CHD9-215	ENST00000565442	ARHGAP39	Q9C0H5	1083 aa		5	□□□□□ -1.61
CHD9-215	ENST00000565442	PLEKHA2	Q9HB19	425 aa		5	□□□□□ -1.61
CHD9-215	ENST00000565442	FLRT1	Q9NZU1	646 aa		5	□□□□□ -1.61
CHD9-215	ENST00000565442	SERGEF	Q9UGK8	458 aa		5	□□□□□ -1.61
CHD9-215	ENST00000565442	RRP7A	Q9Y3A4	280 aa	Known RBP	5	□□□□□ -1.61
CHD9-215	ENST00000565442	HEMK1	Q9Y5R4	338 aa	Predicted RBP	5	□□□□□ -1.61
CHD9-215	ENST00000565442	CNTNAP2	Q9UHC6	1331 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	MBD3L5	A6NJ08	208 aa	Predicted RBP	4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	TISP43	B9A030	160 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	PRY	O14603	147 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	NDUFS1	P28331	727 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	VPS41	P49754	854 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	SOX10	P56693	466 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	TLE3	Q04726	772 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	POU5F1B	Q06416	359 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	SLC14A1	Q13336	389 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	DCTN1	Q14203	1278 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	LARS2	Q15031	903 aa	Known RBP	4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	ZNF484	Q5JVG2	852 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	CC2D1B	Q5T0F9	858 aa	Known RBP	4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	CCDC70	Q6NSX1	233 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	FSIP1	Q8NA03	581 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	ADAMTS18	Q8TE60	1221 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	HERVK_113	Q902F9	699 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	MAEL	Q96JY0	434 aa	Known RBP	4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	ZNF48	Q96MX3	618 aa	Predicted RBP	4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	ASNSD1	Q9NWL6	643 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	IFT80	Q9P2H3	777 aa	Predicted RBP	4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	B3GNT3	Q9Y2A9	372 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	DNAJC16	Q9Y2G8	782 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	WNT6	Q9Y6F9	365 aa		4.99	□□□□□ -1.61
CHD9-215	ENST00000565442	C16orf96	A6NNT2	1141 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	TTC34	A8MYJ7	566 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442		H3BNC9	293 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442		H7C1Q1	480 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	SH3BP5	O60239	455 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	ALDOA	P04075	364 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	NHLRC4	P0CG21	123 aa	Predicted RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	MCM2	P49736	904 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	EFR3A	Q14156	821 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	KPNB1	Q14974	876 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	DLGAP5	Q15398	846 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	TMEM119	Q4V9L6	283 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	FCRLB	Q6BAA4	426 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	VSTM1	Q6UX27	236 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	LAS2	Q8IYD9	372 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	LINS1	Q8NG48	757 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	SLC2A12	Q8TD20	617 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	ARRDC3	Q96B67	414 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	KTI12	Q96EK9	354 aa	Predicted RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	RBM17	Q96I25	401 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	TBATA	Q96M53	351 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	GPR78	Q96P69	363 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	FYTTD1	Q96QD9	318 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	PIGS	Q96S52	555 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	NAP1L4	Q99733	375 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	RNF26	Q9BY78	433 aa	Predicted RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	CLPB	Q9H078	707 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	NOD2	Q9HC29	1040 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	PDE11A	Q9HCR9	933 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	TMLHE	Q9NVH6	421 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	GAR1	Q9NY12	217 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	SEMA5B	Q9P283	1151 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	CRYL1	Q9Y2S2	319 aa		4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	COPG1	Q9Y678	874 aa	Known RBP	4.98	□□□□□ -1.61
CHD9-215	ENST00000565442	SPATA31A1	Q5TZJ5	1347 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	BTBD19	C9JJ37	291 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	EYA2	O00167	538 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	SEPT4	O43236	478 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	CSF1	P09603	554 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	CPA1	P15085	419 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	CHN1	P15882	459 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	SFPQ	P23246	707 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	HOXD12	P35452	270 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	PCP4	P48539	62 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	CCR5	P51681	352 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	SLC37A1	P57057	533 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	SHC2	P98077	582 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	UBE3A	Q05086	875 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	FHL1	Q13642	323 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	CTXN3	Q4LDR2	81 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	TMEM63B	Q5T3F8	832 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	ZNF626	Q68DY1	528 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	RANBP10	Q6VN20	620 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	SLC39A5	Q6ZMH5	540 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	CHSY1	Q86X52	802 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	PTGR2	Q8N8N7	351 aa	Predicted RBP	4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	PNLDC1	Q8NA58	520 aa	Known RBP	4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	SRFBP1	Q8NEF9	429 aa	Known RBP	4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	HIC2	Q96JB3	615 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	RITA1	Q96K30	269 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	TWNK	Q96RR1	684 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	HERC2P3	Q9BVR0	1158 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	PRDM16	Q9HAZ2	1276 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	RASSF1	Q9NS23	344 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	PDP2	Q9P2J9	529 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	PGAP2	Q9UHJ9	254 aa		4.97	□□□□□ -1.61
CHD9-215	ENST00000565442	GJD2	Q9UKL4	321 aa		4.97	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms