RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 OXTRP30559 389 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 NOS2P35228 1153 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 CSKP41240 450 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 CTSOP43234 321 aaPredicted RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 KLK7P49862 253 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 RPS14P62263 151 aaKnown RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 CDK17Q00537 523 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 KRT31Q15323 416 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 C5orf22Q49AR2 442 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 FNDC3BQ53EP0 1204 aaKnown RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 PITRM1Q5JRX3 1037 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 OR6B2Q6IFH4 312 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 TRNP1Q6NT89 227 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 FBXL22Q6P050 247 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 ZDHHC17Q8IUH5 632 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 APCDD1Q8J025 514 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 LGI2Q8N0V4 545 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 CARNMT1Q8N4J0 409 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 EPS8L1Q8TE68 723 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 FOXJ1Q92949 421 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 ALG14Q96F25 216 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 PGAP3Q96FM1 320 aaPredicted RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 NUSAP1Q9BXS6 441 aaKnown RBP15.38■□□□□ 0.05
CLN3-213ENST00000565047 MTG2Q9H4K7 406 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 FANCLQ9NW38 375 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 DDIT4Q9NX09 232 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 SIK3Q9Y2K2 1263 aa15.38■□□□□ 0.05
CLN3-213ENST00000565047 PI4KAP42356 2102 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 SPEGQ15772 3267 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 UPK3BL1B0FP48 263 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 UPK3BL2E5RIL1 263 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 GIPC1O14908 333 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 ASLP04424 464 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 SLC2A3P11169 496 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 MAOBP27338 520 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 CCR1P32246 355 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 SCNN1AP37088 669 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 MATKP42679 507 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 IRAK1P51617 712 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 PLK1P53350 603 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 JAM2P57087 298 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 ARID5AQ03989 594 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 ZBTB16Q05516 673 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 SEMA3BQ13214 749 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 RAPGEF1Q13905 1077 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 NCAPHQ15003 741 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 HNRNPA1L2Q32P51 320 aaKnown RBP15.37■□□□□ 0.05
CLN3-213ENST00000565047 C9orf64Q5T6V5 341 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 CXorf57Q6NSI4 855 aaKnown RBP15.37■□□□□ 0.05
CLN3-213ENST00000565047 APTXQ7Z2E3 356 aaKnown RBP15.37■□□□□ 0.05
CLN3-213ENST00000565047 PIP4P1Q86T03 277 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 CHSY1Q86X52 802 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 XYLT1Q86Y38 959 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 ZNF683Q8IZ20 524 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 ATP6V0D2Q8N8Y2 350 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 TMEM35BQ8NCS4 154 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 OR52K2Q8NGK3 314 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 IGSF8Q969P0 613 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 NOX5Q96PH1 765 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 NUP58Q9BVL2 599 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 GPR174Q9BXC1 333 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 RSPH9Q9H1X1 276 aaPredicted RBP15.37■□□□□ 0.05
CLN3-213ENST00000565047 VPS16Q9H269 839 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 FBRSQ9HAH7 460 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 PIGVQ9NUD9 493 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 KIAA1522Q9P206 1035 aaPredicted RBP15.37■□□□□ 0.05
CLN3-213ENST00000565047 NOCTQ9UK39 431 aaKnown RBP15.37■□□□□ 0.05
CLN3-213ENST00000565047 WASF3Q9UPY6 502 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 OR51B4Q9Y5P0 310 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 ITIH6Q6UXX5 1313 aa15.37■□□□□ 0.05
CLN3-213ENST00000565047 ASPMQ8IZT6 3477 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 ARHGAP33O14559 1287 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 NDUFS2O75306 463 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 GJB3O75712 270 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 MMEP08473 750 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 ZNF18P17022 549 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 CHRNB2P17787 502 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 CSRP1P21291 193 aaKnown RBP15.36■□□□□ 0.05
CLN3-213ENST00000565047 ACSL1P33121 698 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 CXCR3P49682 368 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 NOMO3P69849 1222 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 PLEKHG6Q3KR16 790 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 DAB2IPQ5VWQ8 1189 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 C14orf80Q86SX3 495 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 CIR1Q86X95 450 aaPredicted RBP15.36■□□□□ 0.05
CLN3-213ENST00000565047 CCAR2Q8N163 923 aaKnown RBP15.36■□□□□ 0.05
CLN3-213ENST00000565047 GBP4Q96PP9 640 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 FAM129BQ96TA1 746 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 ORAI3Q9BRQ5 295 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 FAM204AQ9H8W3 233 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 ARHGEF38Q9NXL2 777 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 SUN2Q9UH99 717 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 LIMA1Q9UHB6 759 aaKnown RBP15.36■□□□□ 0.05
CLN3-213ENST00000565047 SLCO3A1Q9UIG8 710 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 TMEM59LQ9UK28 342 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 ERVW-1Q9UQF0 538 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 HS3ST4Q9Y661 456 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 SLCO1B1Q9Y6L6 691 aa15.36■□□□□ 0.05
CLN3-213ENST00000565047 F5H5T6 163 aa15.35■□□□□ 0.05
CLN3-213ENST00000565047 SIN3BO75182 1162 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms