RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SLC30A5Q8TAD4 765 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 HMGB4Q8WW32 186 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 BAP1Q92560 729 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 PRICKLE1Q96MT3 831 aaPredicted RBP13.85□□□□□ -0.19
CLK3-216ENST00000564468 ACOX2Q99424 681 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 C11orf70Q9BRQ4 267 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 TPSD1Q9BZJ3 242 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 CACNA2D2Q9NY47 1150 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 AIPL1Q9NZN9 384 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 TMEM59LQ9UK28 342 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 A0A1B0GVM2 712 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 A0A1W2PQF6 199 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 ANKRD62A6NC57 917 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 TCAF2A6NFQ2 919 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 LRRC53A6NM62 1247 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 FOXD2O60548 495 aaPredicted RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 ZNF217O75362 1048 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 ASLP04424 464 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 DLDP09622 509 aaKnown RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 KRT3P12035 628 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 DESP17661 470 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 SDC4P31431 198 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 RDXP35241 583 aaKnown RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 C1QBPQ07021 282 aaKnown RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 LPAL2Q16609 132 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 C2CD6Q53TS8 623 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 MBLAC2Q68D91 279 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 ACAD10Q6JQN1 1059 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 SERPINA13PQ6UXR4 307 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 CFAP52Q8N1V2 620 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 FAM160A2Q8N612 972 aaPredicted RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 OLIG1Q8TAK6 271 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 PCDHB18PQ96TA0 734 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 TBCBQ99426 244 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 PRMT1Q99873 361 aaKnown RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 SELENOOQ9BVL4 669 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 TKTL2Q9H0I9 626 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 METTL5Q9NRN9 209 aaKnown RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 PIGVQ9NUD9 493 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 ARHGEF38Q9NXL2 777 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 XPO7Q9UIA9 1087 aaKnown RBP13.84□□□□□ -0.19
CLK3-216ENST00000564468 CHD8Q9HCK8 2581 aa13.84□□□□□ -0.19
CLK3-216ENST00000564468 MAP3K13O43283 966 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 PAGE1O75459 146 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 PDGFRAP16234 1089 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 GABRG2P18507 467 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 CD70P32970 193 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 FLT3P36888 993 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 P2RY2P41231 377 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 IL12RB1P42701 662 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 ST8SIA6P61647 398 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 AUHQ13825 339 aaKnown RBP13.83□□□□□ -0.2
CLK3-216ENST00000564468 ST3GAL2Q16842 350 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 ARL13BQ3SXY8 428 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 PLK5Q496M5 336 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 FNDC3BQ53EP0 1204 aaKnown RBP13.83□□□□□ -0.2
CLK3-216ENST00000564468 TMEM215Q68D42 235 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 FBXL22Q6P050 247 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 LRSAM1Q6UWE0 723 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 LRRC31Q6UY01 552 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 SLC36A4Q6YBV0 504 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 ADIPOR2Q86V24 386 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 KBTBD6Q86V97 674 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 C3orf20Q8ND61 904 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 TTC17Q96AE7 1141 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 VCPIP1Q96JH7 1222 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 C1orf74Q96LT6 269 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 RPRD1AQ96P16 312 aaPredicted RBP13.83□□□□□ -0.2
CLK3-216ENST00000564468 SIK2Q9H0K1 926 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 TSPY26PQ9H489 355 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 FBRSQ9HAH7 460 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 SUN2Q9UH99 717 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 PCDHGA5Q9Y5G8 931 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 HS3ST4Q9Y661 456 aa13.83□□□□□ -0.2
CLK3-216ENST00000564468 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.82□□□□□ -0.2
CLK3-216ENST00000564468 A0A1W2PQJ5 194 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 FAM170AA1A519 330 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 DCDC2BA2VCK2 349 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 SIGLEC16A6NMB1 481 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 WASH3PC4AMC7 463 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 CBFA2T2O43439 604 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 CLDN11O75508 207 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 ENDOD1O94919 500 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 EPN2O95208 641 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 EPHX1P07099 455 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 NNMTP40261 264 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 PRKCIP41743 596 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 PTPN9P43378 593 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 SULT2A1Q06520 285 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 KLHL30Q0D2K2 578 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 LMAN2Q12907 356 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 PTP4A2Q12974 167 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 ZNF177Q13360 481 aaPredicted RBP13.82□□□□□ -0.2
CLK3-216ENST00000564468 SPDYCQ5MJ68 293 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 OTUD1Q5VV17 481 aaPredicted RBP13.82□□□□□ -0.2
CLK3-216ENST00000564468 KIAA1211LQ6NV74 962 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 DNAJC24Q6P3W2 148 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 MON1BQ7L1V2 547 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 STRADAQ7RTN6 431 aa13.82□□□□□ -0.2
CLK3-216ENST00000564468 CCAR2Q8N163 923 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms