RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FRYQ5TBA9 3013 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 SPAARA0A1B0GVQ0 90 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 FAM221BA6H8Z2 402 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 TOP3BO95985 862 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 DNTTP04053 509 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 SRPRAP08240 638 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 PRKCSHP14314 528 aaPredicted RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 ST8SIA6P61647 398 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 SIM1P81133 766 aaPredicted RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 BNC1Q01954 994 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 CDH18Q13634 790 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 FSCBQ5H9T9 825 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 PITRM1Q5JRX3 1037 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 ZNF776Q68DI1 518 aaPredicted RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 IL27RAQ6UWB1 636 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 UNQ6494/PRO21346Q6UXR6 183 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 DBX2Q6ZNG2 339 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 USP30Q70CQ3 517 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 CCDC117Q8IWD4 279 aaPredicted RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 CARNMT1Q8N4J0 409 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 PRMT1Q99873 361 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 SCNM1Q9BWG6 230 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 BTBD1Q9H0C5 482 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 C6orf106Q9H6K1 298 aaPredicted RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 SGK2Q9HBY8 427 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 SIX2Q9NPC8 291 aa17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 KIAA1522Q9P206 1035 aaPredicted RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 EIF2B4Q9UI10 523 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 XPO7Q9UIA9 1087 aaKnown RBP17.82■□□□□ 0.44
VPS9D1-203ENST00000563798 TARSL2A2RTX5 802 aaKnown RBP17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 KCNU1A8MYU2 1149 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 C10orf142B7Z368 130 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 SEMA4FO95754 770 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 SLC2A3P11169 496 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 TACR2P21452 398 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 FAM193AP78312 1265 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 APBA1Q02410 837 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 MTA1Q13330 715 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 SLC12A1Q13621 1099 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 TAF5Q15542 800 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 ARHGAP44Q17R89 818 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 ZNF423Q2M1K9 1284 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 TTC31Q49AM3 519 aaPredicted RBP17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 EFHC1Q5JVL4 640 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 FAM124AQ86V42 546 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 CACUL1Q86Y37 369 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 LGI2Q8N0V4 545 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 CFAP52Q8N1V2 620 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 ATP6V0D2Q8N8Y2 350 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 GATA6Q92908 595 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 PPP1R13BQ96KQ4 1090 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 CPXM1Q96SM3 734 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 MIR1-1HGQ9H1L0 117 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 TJP2Q9UDY2 1190 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 ERVW-1Q9UQF0 538 aa17.81■□□□□ 0.44
VPS9D1-203ENST00000563798 TMEM8BA6NDV4 472 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 C1QTNF9BB2RNN3 333 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 SH3BP5O60239 455 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 HSF2BPO75031 334 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 CBFA2T3O75081 653 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 MOCS3O95396 460 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 CER1O95813 267 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 MOCS2O96007 188 aaPredicted RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 C1QTNF9P0C862 333 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 SPINK2P20155 84 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 RDXP35241 583 aaKnown RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 VASPP50552 380 aaPredicted RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 AFF3P51826 1226 aaKnown RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 PLK1P53350 603 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 PITX1P78337 314 aaPredicted RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 CDK17Q00537 523 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 PTK2Q05397 1052 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 SFSWAPQ12872 951 aaKnown RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 C9orf64Q5T6V5 341 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 TTC39BQ5VTQ0 682 aaPredicted RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 RAP1GAP2Q684P5 730 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 DPY19L2P1Q6NXN4 242 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 GLRX5Q86SX6 157 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 DEFB106AQ8N104 65 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 ORAI3Q9BRQ5 295 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 PABPC3Q9H361 631 aaKnown RBP17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 CHMP5Q9NZZ3 219 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 SLC12A6Q9UHW9 1150 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 MSRB2Q9Y3D2 182 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 PCDHGB2Q9Y5G2 931 aa17.8■□□□□ 0.44
VPS9D1-203ENST00000563798 SIN3BO75182 1162 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 CD27P26842 260 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 CCR1P32246 355 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 CLCN1P35523 988 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 MATKP42679 507 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 GRIA4P48058 902 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 SNX16P57768 344 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 ECT2LQ008S8 904 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 TRIP6Q15654 476 aaKnown RBP17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 MAN2A1Q16706 1144 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 HLA-BQ31612 363 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 MMS22LQ6ZRQ5 1243 aa17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 C11orf57Q6ZUT1 292 aaPredicted RBP17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 RAB44Q7Z6P3 723 aaPredicted RBP17.79■□□□□ 0.44
VPS9D1-203ENST00000563798 CHSY1Q86X52 802 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms