RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 ARID5BQ14865 1188 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 CST6Q15828 149 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 SGSM1Q2NKQ1 1148 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 HNRNPA1L2Q32P51 320 aaKnown RBP10.79□□□□□ -0.68
SF3B3-204ENST00000563739 TTC31Q49AM3 519 aaPredicted RBP10.79□□□□□ -0.68
SF3B3-204ENST00000563739 FSCBQ5H9T9 825 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 PIK3R6Q5UE93 754 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 MMS22LQ6ZRQ5 1243 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 ADAT2Q7Z6V5 191 aaKnown RBP10.79□□□□□ -0.68
SF3B3-204ENST00000563739 DHX40Q8IX18 779 aaKnown RBP10.79□□□□□ -0.68
SF3B3-204ENST00000563739 SLC25A45Q8N413 288 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 OR2T34Q8NGX1 318 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 TMC2Q8TDI7 906 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 TAF4BQ92750 862 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 SEMA4DQ92854 862 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 PRR11Q96HE9 360 aaPredicted RBP10.79□□□□□ -0.68
SF3B3-204ENST00000563739 NAF1Q96HR8 494 aaKnown RBP10.79□□□□□ -0.68
SF3B3-204ENST00000563739 NT5C1AQ9BXI3 368 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 CLMPQ9H6B4 373 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 UCKL1Q9NWZ5 548 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 FBXL12Q9NXK8 326 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 CLCA2Q9UQC9 943 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 CA5BQ9Y2D0 317 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 SCN8AQ9UQD0 1980 aa10.79□□□□□ -0.68
SF3B3-204ENST00000563739 LRRK2Q5S007 2527 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 RP1P56715 2156 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 FAM47DPA6NHR8 397 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 YJEFN3A6XGL0 299 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 TTC34A8MYJ7 566 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 E7ENQ6 273 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 SIGLEC6O43699 453 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 STX6O43752 255 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 SDC3O75056 442 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 MT-CO3P00414 261 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 CYBBP04839 570 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 RPN1P04843 607 aaKnown RBP10.78□□□□□ -0.68
SF3B3-204ENST00000563739 MPOP05164 745 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 MYF5P13349 255 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 VAV1P15498 845 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 ABCB4P21439 1286 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 CSKP41240 450 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 PIK3CAP42336 1068 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 VASPP50552 380 aaPredicted RBP10.78□□□□□ -0.68
SF3B3-204ENST00000563739 RAD23BP54727 409 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 MCCD1P59942 119 aaPredicted RBP10.78□□□□□ -0.68
SF3B3-204ENST00000563739 ZNF394Q53GI3 561 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 ARHGAP40Q5TG30 622 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 ARHGAP17Q68EM7 881 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 KDM7AQ6ZMT4 941 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 TATDN2Q93075 761 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 NIF3L1Q9GZT8 377 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 CUEDC2Q9H467 287 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 ERVMER34-1Q9H9K5 563 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 GDF3Q9NR23 364 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 CGNQ9P2M7 1197 aaKnown RBP10.78□□□□□ -0.68
SF3B3-204ENST00000563739 FZD4Q9ULV1 537 aa10.78□□□□□ -0.68
SF3B3-204ENST00000563739 DOPEY1Q5JWR5 2465 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 A0A1B0GVM2 712 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 TLR4O00206 839 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 RNF103O00237 685 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 CAPN9O14815 690 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 YKT6O15498 198 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 LATS1O95835 1130 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 CDK4P11802 303 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 C6P13671 934 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 ACTN2P35609 894 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 TKTL1P51854 596 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 RHDQ02161 417 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 ADGRF1Q5T601 910 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 KIAA1614Q5VZ46 1190 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 NAPEPLDQ6IQ20 393 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 MSANTD2Q6P1R3 559 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 TADA2BQ86TJ2 420 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 MMAAQ8IVH4 418 aaKnown RBP10.77□□□□□ -0.69
SF3B3-204ENST00000563739 UBR7Q8N806 425 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 ZNF248Q8NDW4 579 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 ENGASEQ8NFI3 743 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 EDEM1Q92611 657 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 GOLGA1Q92805 767 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 PTPRN2Q92932 1015 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 CDK5RAP1Q96SZ6 601 aaKnown RBP10.77□□□□□ -0.69
SF3B3-204ENST00000563739 LGMNQ99538 433 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 UBXN6Q9BZV1 441 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 CYP3A43Q9HB55 503 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 AASDHPPTQ9NRN7 309 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 SLCO3A1Q9UIG8 710 aa10.77□□□□□ -0.69
SF3B3-204ENST00000563739 HBS1LQ9Y450 684 aaKnown RBP10.77□□□□□ -0.69
SF3B3-204ENST00000563739 ABCA12Q86UK0 2595 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 TBL1XO60907 577 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 RNASEH2AO75792 299 aaKnown RBP10.76□□□□□ -0.69
SF3B3-204ENST00000563739 KIF20AO95235 890 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 WISP1O95388 367 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 ZBED1O96006 694 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 NR3C1P04150 777 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 P4HA1P13674 534 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 SLC8A1P32418 973 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 GCLMP48507 274 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 PSMD8P48556 350 aa10.76□□□□□ -0.69
SF3B3-204ENST00000563739 STK19P49842 368 aaPredicted RBP10.76□□□□□ -0.69
SF3B3-204ENST00000563739 PCBP4P57723 403 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms