RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 PIP5K1AQ99755 562 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 FOXB1Q99853 325 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 CRACR2AQ9BSW2 395 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 SPXQ9BT56 116 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 TEX12Q9BXU0 123 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 PCED1AQ9H1Q7 454 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 MANSC1Q9H8J5 431 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 PLEKHA2Q9HB19 425 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 FSCN3Q9NQT6 498 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 C1GALT1Q9NS00 363 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 TAS2R3Q9NYW6 316 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 CPSF2Q9P2I0 782 aaKnown RBP5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 FTSJ1Q9UET6 329 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 NARFQ9UHQ1 456 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 HOOK1Q9UJC3 728 aaKnown RBP5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 ACSL6Q9UKU0 697 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 FAM184BQ9ULE4 1060 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 CNTN6Q9UQ52 1028 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 KCNE2Q9Y6J6 123 aa5.48□□□□□ -1.53
VPS35P1-201ENST00000563400 CCDC151A5D8V7 595 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 H7C4K7 107 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 J3KTA2 159 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 AP3B1O00203 1094 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CACNB4O00305 520 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 DNM1LO00429 736 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 TSPAN4O14817 238 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CCNDBP1O95273 360 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 TFRCP02786 760 aaKnown RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CCDC175P0C221 793 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 MYBL1P10243 752 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 PFKLP17858 780 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 TNFRSF8P28908 595 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 HOXA10P31260 410 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 THBS2P35442 1172 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 IL15P40933 162 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 SSR1P43307 286 aaKnown RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 RABIFP47224 123 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 SLC11A2P49281 568 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 GALK1P51570 392 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 UCP3P55916 312 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 C21orf58P58505 322 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 TGFB2P61812 414 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CDK5R2Q13319 367 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 SLC39A6Q13433 755 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 HABP2Q14520 560 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 TRIM60Q495X7 471 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CEP55Q53EZ4 464 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CCDC183Q5T5S1 534 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 PLAG1Q6DJT9 500 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 WDR93Q6P2C0 686 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 ZCCHC12Q6PEW1 402 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 USP17L6PQ6QN14 398 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 FAM83HQ6ZRV2 1179 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CCDC186Q7Z3E2 898 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 RABEPKQ7Z6M1 372 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 DEFB132Q7Z7B7 95 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 TMEM110Q86TL2 294 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 IQCF2Q8IXL9 164 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 POC5Q8NA72 575 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 FBXO18Q8NFZ0 1043 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 KCNE4Q8WWG9 221 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CPT1BQ92523 772 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 MR1Q95460 341 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 SPSB4Q96A44 273 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 NLRP4Q96MN2 994 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 CMTM3Q96MX0 182 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 PITHD1Q9GZP4 211 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 REXO4Q9GZR2 422 aaKnown RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 SEMA4BQ9NPR2 832 aaPredicted RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 DDX43Q9NXZ2 648 aaKnown RBP5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 SARDHQ9UL12 918 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 PCDHGA5Q9Y5G8 931 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 PCDHGA1Q9Y5H4 931 aa5.47□□□□□ -1.53
VPS35P1-201ENST00000563400 PEAK1Q9H792 1746 aa5.46□□□□□ -1.53
VPS35P1-201ENST00000563400 A0A087WWL8 130 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 A0A0A6YYK5 440 aaPredicted RBP5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 A0A1W2PRV1 198 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 MYO1GB0I1T2 1018 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 BTBD18B2RXH4 712 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 UBXN8O00124 270 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 WNT10BO00744 389 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 BBOX1O75936 387 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 UNC5CO95185 931 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 OR2C1O95371 312 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 PRNPP04156 253 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 INHBAP08476 426 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM87AP0C7U9 286 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 ZNF853P0CG23 659 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 PDHBP11177 359 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 SRFP11831 508 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 TNNT1P13805 278 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 DDCP20711 480 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 PTAFRP25105 342 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 ACVR2AP27037 513 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 TMOD1P28289 359 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 PBX3P40426 434 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 GPR15P49685 360 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 CPT1AP50416 773 aa5.46□□□□□ -1.54
VPS35P1-201ENST00000563400 PCBP3P57721 371 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms