RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 DEC1Q9P2X7 70 aa22.37■■□□□ 1.17
SNX1-206ENST00000559389 PPARGC1AQ9UBK2 798 aaKnown RBP22.37■■□□□ 1.17
SNX1-206ENST00000559389 VCANP13611 3396 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 DRGXA6NNA5 263 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 BUB1O43683 1085 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 LRIG2O94898 1065 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 CISD3P0C7P0 127 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 HOXC13P31276 330 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 DGKGP49619 791 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 GALK1P51570 392 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 TAS2R40P59535 323 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 CA9Q16790 459 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 HADHQ16836 314 aaKnown RBP22.36■■□□□ 1.17
SNX1-206ENST00000559389 SMTNL2Q2TAL5 461 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 CHST9Q7L1S5 443 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 MFN1Q8IWA4 741 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 CCAR2Q8N163 923 aaKnown RBP22.36■■□□□ 1.17
SNX1-206ENST00000559389 ZNF557Q8N988 423 aaPredicted RBP22.36■■□□□ 1.17
SNX1-206ENST00000559389 TERB1Q8NA31 727 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 PJA1Q8NG27 643 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 WFDC5Q8TCV5 224 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 MFSD1Q9H3U5 465 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 DHX35Q9H5Z1 703 aaKnown RBP22.36■■□□□ 1.17
SNX1-206ENST00000559389 ZWILCHQ9H900 591 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 ARHGEF4Q9NR80 690 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 NDRG2Q9UN36 371 aaKnown RBP22.36■■□□□ 1.17
SNX1-206ENST00000559389 SLC27A6Q9Y2P4 619 aa22.36■■□□□ 1.17
SNX1-206ENST00000559389 TRIM24O15164 1050 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 RARAP10276 462 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 SLC1A1P43005 524 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 SSR1P43307 286 aaKnown RBP22.35■■□□□ 1.17
SNX1-206ENST00000559389 CDH18Q13634 790 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 UBXN2BQ14CS0 331 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 BOLA3Q53S33 107 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 ALFQ53S48 1182 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 ASTLQ6HA08 431 aaPredicted RBP22.35■■□□□ 1.17
SNX1-206ENST00000559389 CCDC105Q8IYK2 499 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.35■■□□□ 1.17
SNX1-206ENST00000559389 EZH1Q92800 747 aaPredicted RBP22.35■■□□□ 1.17
SNX1-206ENST00000559389 TBC1D31Q96DN5 1066 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 NELL2Q99435 816 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 EPAS1Q99814 870 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 OSBPL6Q9BZF3 934 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 TSGA10Q9BZW7 698 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 ZYG11BQ9C0D3 744 aa22.35■■□□□ 1.17
SNX1-206ENST00000559389 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.35■■□□□ 1.17
SNX1-206ENST00000559389 SRGAP2O75044 1071 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 CNTN5O94779 1100 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 KAT7O95251 611 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 APODP05090 189 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 DRD1P21728 446 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 GRIA2P42262 883 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 CDH4P55283 916 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 GRSF1Q12849 480 aaKnown RBP eCLIP22.34■■□□□ 1.17
SNX1-206ENST00000559389 CCINQ13939 588 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 DPYSL2Q16555 572 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 PREPLQ4J6C6 727 aaPredicted RBP22.34■■□□□ 1.17
SNX1-206ENST00000559389 KCNT1Q5JUK3 1230 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 ZNF662Q6ZS27 426 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 BMP8AQ7Z5Y6 402 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 CARNMT1Q8N4J0 409 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 FLCNQ8NFG4 579 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 FIBINQ8TAL6 211 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 ZNF830Q96NB3 372 aaPredicted RBP22.34■■□□□ 1.17
SNX1-206ENST00000559389 KCTD15Q96SI1 283 aaPredicted RBP22.34■■□□□ 1.17
SNX1-206ENST00000559389 GOLPH3Q9H4A6 298 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 C11orf16Q9NQ32 467 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 MPP6Q9NZW5 540 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 ZNF212Q9UDV6 495 aa22.34■■□□□ 1.17
SNX1-206ENST00000559389 MTF2Q9Y483 593 aaPredicted RBP22.34■■□□□ 1.17
SNX1-206ENST00000559389 DOCK4Q8N1I0 1966 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 MACROD2A1Z1Q3 448 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 CLDN11O75508 207 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 EGFP01133 1207 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 COMTP21964 271 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 HLA-FP30511 346 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 HTR7P34969 479 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 CXorf57Q6NSI4 855 aaKnown RBP22.33■■□□□ 1.17
SNX1-206ENST00000559389 POLNQ7Z5Q5 900 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 SFTPA1Q8IWL2 248 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 HSPH1Q92598 858 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 LMLNQ96KR4 655 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 HYOU1Q9Y4L1 999 aa22.33■■□□□ 1.17
SNX1-206ENST00000559389 A0A0A0MRY4 1105 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 GRID2IPA4D2P6 1211 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 FAM170BA6NMN3 283 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 H0Y626 953 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 KRT86O43790 486 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 SPOPO43791 374 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 CREB3O43889 395 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 KRT7P08729 469 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 CHRNB1P11230 501 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 PABPC1P11940 636 aaKnown RBP22.32■■□□□ 1.16
SNX1-206ENST00000559389 GJC1P36383 396 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 ZNF135P52742 658 aaPredicted RBP22.32■■□□□ 1.16
SNX1-206ENST00000559389 TPI1P60174 286 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 LMAN2Q12907 356 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 FZD5Q13467 585 aa22.32■■□□□ 1.16
SNX1-206ENST00000559389 IFI16Q16666 785 aaKnown RBP22.32■■□□□ 1.16
SNX1-206ENST00000559389 GEN1Q17RS7 908 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms