RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 M0QZQ0 153 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 APAF1O14727 1248 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 NPC1O15118 1278 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 PPM1GO15355 546 aaPredicted RBP5.74□□□□□ -1.49
PRPF39-209ENST00000556353 SMAD6O43541 496 aaKnown RBP5.74□□□□□ -1.49
PRPF39-209ENST00000556353 HARSP12081 509 aaKnown RBP5.74□□□□□ -1.49
PRPF39-209ENST00000556353 TBXAS1P24557 533 aaPredicted RBP5.74□□□□□ -1.49
PRPF39-209ENST00000556353 CDKN2AP42771 156 aaKnown RBP5.74□□□□□ -1.49
PRPF39-209ENST00000556353 PMS2P11Q13670 270 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 CSHL1Q14406 222 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 FBXO38Q6PIJ6 1188 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 TRAPPC11Q7Z392 1133 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 TMEM199Q8N511 208 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 FAM47BQ8NA70 645 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 ACRBPQ8NEB7 543 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 BRI3BPQ8WY22 251 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 MSI2Q96DH6 328 aaKnown RBP5.74□□□□□ -1.49
PRPF39-209ENST00000556353 THOC3Q96J01 351 aaKnown RBP5.74□□□□□ -1.49
PRPF39-209ENST00000556353 GPR78Q96P69 363 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 HIPK2Q9H2X6 1198 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 PRDM16Q9HAZ2 1276 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 ANAPC4Q9UJX5 808 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 CA14Q9ULX7 337 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 POGZQ7Z3K3 1410 aa5.74□□□□□ -1.49
PRPF39-209ENST00000556353 DIP2CQ9Y2E4 1556 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 A0A0G2JK05 382 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 DPPA5A6NC42 116 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 J3KTA2 159 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 TRIM27P14373 513 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 CDC25AP30304 524 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 ERV3-1Q14264 604 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 PGM5Q15124 567 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 SMTNL2Q2TAL5 461 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 FAM209BQ5JX69 171 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 ZNF474Q6S9Z5 364 aaPredicted RBP5.73□□□□□ -1.49
PRPF39-209ENST00000556353 C16orf89Q6UX73 402 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 DPP9Q86TI2 863 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 CAMK1GQ96NX5 476 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 ABHD14AQ9BUJ0 271 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 FZD3Q9NPG1 666 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 WWOXQ9NZC7 414 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 B3GNT3Q9Y2A9 372 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 PCDHB7Q9Y5E2 793 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 AKNAQ7Z591 1439 aa5.73□□□□□ -1.49
PRPF39-209ENST00000556353 KIDINS220Q9ULH0 1771 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 PREX1Q8TCU6 1659 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 DENND4BO75064 1496 aaPredicted RBP5.72□□□□□ -1.49
PRPF39-209ENST00000556353 PNMA6EA0A0J9YXQ4 647 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 KIF3BO15066 747 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 EIF5BO60841 1220 aaKnown RBP5.72□□□□□ -1.49
PRPF39-209ENST00000556353 ITGA5P08648 1049 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 RFPL3SP0C7P2 107 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 TNFSF4P23510 183 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 PPATQ06203 517 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 PTGR1Q14914 329 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 SLC35G1Q2M3R5 365 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 ISM2Q6H9L7 571 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 MSANTD2Q6P1R3 559 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 LRIG3Q6UXM1 1119 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 SRFBP1Q8NEF9 429 aaKnown RBP5.72□□□□□ -1.49
PRPF39-209ENST00000556353 NPIPB3Q92617 1050 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 ZNF566Q969W8 418 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 FAR2Q96K12 515 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 C8orf48Q96LL4 319 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 NAA15Q9BXJ9 866 aaKnown RBP5.72□□□□□ -1.49
PRPF39-209ENST00000556353 MRPL44Q9H9J2 332 aaKnown RBP5.72□□□□□ -1.49
PRPF39-209ENST00000556353 FSCN3Q9NQT6 498 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 HELLSQ9NRZ9 838 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 CHPF2Q9P2E5 772 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 UTS2RQ9UKP6 389 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 SLC8A2Q9UPR5 921 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 LRP12Q9Y561 859 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 CEP83Q9Y592 693 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 ABCC1P33527 1531 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 ARHGEF12Q9NZN5 1544 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 STRCQ7RTU9 1775 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 C3P01024 1663 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 CNTNAP2Q9UHC6 1331 aa5.72□□□□□ -1.49
PRPF39-209ENST00000556353 GXYLT2A0PJZ3 443 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 PODXLO00592 558 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 DHHO43323 396 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 NCK2O43639 380 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 ATG13O75143 517 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 FGF18O76093 207 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 PARNO95453 639 aaKnown RBP5.71□□□□□ -1.5
PRPF39-209ENST00000556353 MYL3P08590 195 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 T-ENOLP0DO92 83 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 EEF1GP26641 437 aaKnown RBP5.71□□□□□ -1.5
PRPF39-209ENST00000556353 PIK3CD-AS1Q5SR53 167 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 C6orf10Q5SRN2 563 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 C11orf96Q7Z7L8 435 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 PJA1Q8NG27 643 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 SLC22A17Q8WUG5 538 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 CENPIQ92674 756 aaPredicted RBP5.71□□□□□ -1.5
PRPF39-209ENST00000556353 EME1Q96AY2 570 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 PAAF1Q9BRP4 392 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 WDR83Q9BRX9 315 aaKnown RBP5.71□□□□□ -1.5
PRPF39-209ENST00000556353 AAMDCQ9H7C9 122 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 KCNK9Q9NPC2 374 aa5.71□□□□□ -1.5
PRPF39-209ENST00000556353 NECTIN3Q9NQS3 549 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms