RNA–Protein interactions for RNA: ENST00000555905.5

TMEM260-208, Transcript of transmembrane protein 260, humanhuman

TSL 5

Gene TMEM260, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-208ENST00000555905 ASB16Q96NS5 453 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 RPRD1AQ96P16 312 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-208ENST00000555905 PRMT1Q99873 361 aaKnown RBP11.38□□□□□ -0.59
TMEM260-208ENST00000555905 ZYG11BQ9C0D3 744 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 POMKQ9H5K3 350 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 UBE2ZQ9H832 354 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-208ENST00000555905 L2HGDHQ9H9P8 463 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 ARHGEF4Q9NR80 690 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 HOMER3Q9NSC5 361 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 SMARCAL1Q9NZC9 954 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 TBC1D14Q9P2M4 693 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 PPARGC1AQ9UBK2 798 aaKnown RBP11.38□□□□□ -0.59
TMEM260-208ENST00000555905 STOML2Q9UJZ1 356 aa11.38□□□□□ -0.59
TMEM260-208ENST00000555905 USP15Q9Y4E8 981 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-208ENST00000555905 IGLV3-10A0A075B6K4 115 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 TYW5A2RUC4 315 aaKnown RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 CTAGE15A4D2H0 777 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 DRGXA6NNA5 263 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 PDE2AO00408 941 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 SCAMP3O14828 347 aaKnown RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 GREM1O60565 184 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 CTAGE8P0CG41 777 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 ERCC2P18074 760 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 TGM2P21980 687 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 HOXC13P31276 330 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 SLC6A4P31645 630 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 CHKAP35790 457 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 KLF1Q13351 362 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 SMAD4Q13485 552 aaKnown RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 TTC39BQ5VTQ0 682 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 SLC9A4Q6AI14 798 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 RFWD3Q6PCD5 774 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 TMCO3Q6UWJ1 677 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 OTOP3Q7RTS5 596 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 CTAGE6Q86UF2 777 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 BBS7Q8IWZ6 715 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 CTAGE4Q8IX94 777 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 ZNF683Q8IZ20 524 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 CPXM2Q8N436 756 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 PQLC3Q8N755 202 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 SUSD6Q92537 303 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 P3H4Q92791 437 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 HLA-CQ95604 372 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 RPGRIP1Q96KN7 1286 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 MYADMQ96S97 322 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 AP1M1Q9BXS5 423 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 FRMD8P1Q9BZ68 369 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-208ENST00000555905 RETREG1Q9H6L5 497 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 TRPV4Q9HBA0 871 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 OBP2AQ9NY56 170 aa11.37□□□□□ -0.59
TMEM260-208ENST00000555905 DOCK4Q8N1I0 1966 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 TCRBV7S2A1N4TA0A589 114 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 CCDC188H7C350 402 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 APOC4-APOC2K7ER74 178 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 DCLK1O15075 740 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 TSPAN3O60637 253 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 APOC2P02655 101 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 CYBBP04839 570 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 RHOQP17081 205 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 SERPINB6P35237 376 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 VIPR2P41587 438 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 NR2C2P49116 596 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 ADCY2Q08462 1091 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 C5orf22Q49AR2 442 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 C1orf228Q6PIY5 440 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 BZW1Q7L1Q6 419 aaKnown RBP11.36□□□□□ -0.59
TMEM260-208ENST00000555905 ZNF572Q7Z3I7 529 aaPredicted RBP11.36□□□□□ -0.59
TMEM260-208ENST00000555905 FAM217AQ8IXS0 508 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 LZTR1Q8N653 840 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 PLD5Q8N7P1 536 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 TDRD5Q8NAT2 981 aaKnown RBP11.36□□□□□ -0.59
TMEM260-208ENST00000555905 HJURPQ8NCD3 748 aaPredicted RBP11.36□□□□□ -0.59
TMEM260-208ENST00000555905 SPATA4Q8NEY3 305 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 BPIFB1Q8TDL5 484 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 IGSF8Q969P0 613 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 OTUB2Q96DC9 234 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 TMA16Q96EY4 203 aaKnown RBP11.36□□□□□ -0.59
TMEM260-208ENST00000555905 HERPUD2Q9BSE4 406 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 CARD6Q9BX69 1037 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 ZFP14Q9HCL3 533 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 THG1LQ9NWX6 298 aaKnown RBP11.36□□□□□ -0.59
TMEM260-208ENST00000555905 MPP6Q9NZW5 540 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 HEY1Q9Y5J3 304 aa11.36□□□□□ -0.59
TMEM260-208ENST00000555905 SZT2Q5T011 3432 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 GRXCR2A6NFK2 248 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 HEPACAM2A8MVW5 462 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 WASH4PA8MWX3 477 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 TRDMT1O14717 391 aaKnown RBP11.35□□□□□ -0.59
TMEM260-208ENST00000555905 CLDN11O75508 207 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 LAMP2P13473 410 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 IFNAR2P48551 515 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 VCPP55072 806 aaKnown RBP11.35□□□□□ -0.59
TMEM260-208ENST00000555905 CDH4P55283 916 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 PAFAH1B3Q15102 231 aaKnown RBP11.35□□□□□ -0.59
TMEM260-208ENST00000555905 CCNG2Q16589 344 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 MPPE1Q53F39 396 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 NCBP2-AS2Q69YL0 99 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 MTSS1LQ765P7 747 aa11.35□□□□□ -0.59
TMEM260-208ENST00000555905 CHST9Q7L1S5 443 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms