RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 LRRC31Q6UY01 552 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 NUDT18Q6ZVK8 323 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 BNIPLQ7Z465 357 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 ANKS1BQ7Z6G8 1248 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 TMEM25Q86YD3 366 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 CCDC26Q8TAB7 109 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 FAM3CQ92520 227 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 NTAN1Q96AB6 310 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 TMA16Q96EY4 203 aaKnown RBP11.27□□□□□ -0.61
SHMT2-218ENST00000555213 PBKQ96KB5 322 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 NELL2Q99435 816 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 P2RY13Q9BPV8 354 aa11.27□□□□□ -0.61
SHMT2-218ENST00000555213 KANSL1LA0AUZ9 987 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 KRBA1A5PL33 1030 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 OTOL1A6NHN0 477 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 KCNK3O14649 394 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 NCAM2O15394 837 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 PRPSAP2O60256 369 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 CACNG3O60359 315 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 TSPAN3O60637 253 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 SLU7O95391 586 aaKnown RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 PENKP01210 267 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 PYGMP11217 842 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 PCK1P35558 622 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 ATXN1P54253 815 aaKnown RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 TERF1P54274 439 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 STARD6P59095 220 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 CDH18Q13634 790 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 LRRC32Q14392 662 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 UBXN2BQ14CS0 331 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 FAM133BQ5BKY9 247 aaKnown RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 MS4A13Q5J8X5 152 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 MPP7Q5T2T1 576 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 NADSYN1Q6IA69 706 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 GRAMD4Q6IC98 578 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 RFWD3Q6PCD5 774 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 CYP4V2Q6ZWL3 525 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 LGI2Q8N0V4 545 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 FLCNQ8NFG4 579 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 ACTRT1Q8TDG2 376 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 BHMTQ93088 406 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 CAPZA3Q96KX2 299 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 RPRD1AQ96P16 312 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 HAPLN3Q96S86 360 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 C1QTNF1Q9BXJ1 281 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 SIK2Q9H0K1 926 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 DNAJC17Q9NVM6 304 aaKnown RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 CALCOCO1Q9P1Z2 691 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 DEC1Q9P2X7 70 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 TTC7AQ9ULT0 858 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-218ENST00000555213 HS3ST4Q9Y661 456 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 TICRRQ7Z2Z1 1910 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 COL4A2P08572 1712 aa11.26□□□□□ -0.61
SHMT2-218ENST00000555213 GOLGA6L7A0A1B0GV03 622 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 MIF4GDA9UHW6 222 aaKnown RBP11.25□□□□□ -0.61
SHMT2-218ENST00000555213 TRDMT1O14717 391 aaKnown RBP11.25□□□□□ -0.61
SHMT2-218ENST00000555213 TBL1XO60907 577 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 LRCH4O75427 683 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 APODP05090 189 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 IL1R2P27930 398 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 SLC6A4P31645 630 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 ADRA1BP35368 520 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 SSR1P43307 286 aaKnown RBP11.25□□□□□ -0.61
SHMT2-218ENST00000555213 DGKGP49619 791 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 DNA2P51530 1060 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 KDSRQ06136 332 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 SCAPQ12770 1279 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 AUHQ13825 339 aaKnown RBP11.25□□□□□ -0.61
SHMT2-218ENST00000555213 PON2Q15165 354 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 PIK3R6Q5UE93 754 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 FYB2Q5VWT5 728 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 MFN1Q8IWA4 741 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 PBXIP1Q96AQ6 731 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 C1orf74Q96LT6 269 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 PRICKLE1Q96MT3 831 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-218ENST00000555213 PNKPQ96T60 521 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 EPAS1Q99814 870 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 HERPUD2Q9BSE4 406 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 SLC2A11Q9BYW1 496 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 OSBPL6Q9BZF3 934 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 LTB4R2Q9NPC1 389 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 ARHGEF4Q9NR80 690 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 XPO7Q9UIA9 1087 aaKnown RBP11.25□□□□□ -0.61
SHMT2-218ENST00000555213 VANGL2Q9ULK5 521 aa11.25□□□□□ -0.61
SHMT2-218ENST00000555213 NDRG2Q9UN36 371 aaKnown RBP11.25□□□□□ -0.61
SHMT2-218ENST00000555213 MYO10Q9HD67 2058 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 COL4A3Q01955 1670 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 A0A1B0GVM2 712 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 CCDC66A2RUB6 948 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 TCAF2A6NFQ2 919 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 C3orf70A6NLC5 250 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-218ENST00000555213 TULP3O75386 442 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 DRD1P21728 446 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 HOXD9P28356 352 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-218ENST00000555213 MIPP30301 263 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 OPRD1P41143 372 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 GRIA2P42262 883 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 MAGEA9P43362 315 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 ARSEP51690 589 aa11.24□□□□□ -0.61
SHMT2-218ENST00000555213 OXCT1P55809 520 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms