RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 PPP1R2P41236 205 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 PITX1P78337 314 aaPredicted RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 GCNT1Q02742 428 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 ZBTB16Q05516 673 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 CDH18Q13634 790 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 MORC3Q14149 939 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 TEAD4Q15561 434 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 TTC31Q49AM3 519 aaPredicted RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 CCDC157Q569K6 752 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 ZC3H12AQ5D1E8 599 aaKnown RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 PITRM1Q5JRX3 1037 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 RAP1GAP2Q684P5 730 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 GJB7Q6PEY0 223 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 ADAT2Q7Z6V5 191 aaKnown RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 MMAAQ8IVH4 418 aaKnown RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 CCDC117Q8IWD4 279 aaPredicted RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 TRIM59Q8IWR1 403 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 APCDD1Q8J025 514 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 LGI2Q8N0V4 545 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 AZIN2Q96A70 460 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 SLC39A13Q96H72 371 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 MRGPRX3Q96LB0 322 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 DDX50Q9BQ39 737 aaKnown RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 PCED1AQ9H1Q7 454 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 NEUROG2Q9H2A3 272 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 PABPC3Q9H361 631 aaKnown RBP11.89□□□□□ -0.51
NEK3-204ENST00000552973 SGK2Q9HBY8 427 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 FBXL12Q9NXK8 326 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 SERGEFQ9UGK8 458 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 CYTH4Q9UIA0 394 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 SLCO3A1Q9UIG8 710 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 ERVW-1Q9UQF0 538 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 NCKAP1Q9Y2A7 1128 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 TLR6Q9Y2C9 796 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 CEP83Q9Y592 693 aa11.89□□□□□ -0.51
NEK3-204ENST00000552973 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.89□□□□□ -0.51
NEK3-204ENST00000552973 SYNJ2BP-COX16A0A087WUM0 186 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 E5RJQ4 531 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 H0Y8X5 98 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 MID1O15344 667 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 PAPSS1O43252 624 aaPredicted RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 THAP12O43422 761 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 LUC7L3O95232 432 aaKnown RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 ZNF883P0CG24 379 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 TACR2P21452 398 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 CD27P26842 260 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 USP8P40818 1118 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 APBA1Q02410 837 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 BECN1Q14457 450 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 SUZ12Q15022 739 aaKnown RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 TAF5Q15542 800 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 HNRNPA1L2Q32P51 320 aaKnown RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 C9orf64Q5T6V5 341 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 KIAA0895LQ68EN5 471 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 CCNI2Q6ZMN8 369 aaPredicted RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 DBX2Q6ZNG2 339 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 GLRX5Q86SX6 157 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 CHSY1Q86X52 802 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 ZNF557Q8N988 423 aaPredicted RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 ZNF606Q8WXB4 792 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 RPL10LQ96L21 214 aaKnown RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 SLC6A18Q96N87 628 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 ORAI3Q9BRQ5 295 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 CRACR2AQ9BSW2 395 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 RSPH9Q9H1X1 276 aaPredicted RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 FBRSQ9HAH7 460 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 EBF2Q9HAK2 575 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 TOR4AQ9NXH8 423 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 COX16Q9P0S2 106 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 KIAA1522Q9P206 1035 aaPredicted RBP11.88□□□□□ -0.51
NEK3-204ENST00000552973 TJP2Q9UDY2 1190 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 LHX6Q9UPM6 363 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 LAMA1P25391 3075 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 CHD8Q9HCK8 2581 aa11.88□□□□□ -0.51
NEK3-204ENST00000552973 FLRT2O43155 660 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 SART1O43290 800 aaKnown RBP11.87□□□□□ -0.51
NEK3-204ENST00000552973 RNASEH1O60930 286 aaKnown RBP11.87□□□□□ -0.51
NEK3-204ENST00000552973 RNASEH2AO75792 299 aaKnown RBP11.87□□□□□ -0.51
NEK3-204ENST00000552973 GNA14O95837 355 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 TRUB2O95900 331 aaKnown RBP11.87□□□□□ -0.51
NEK3-204ENST00000552973 APOEP02649 317 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 ASLP04424 464 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 CAPNS1P04632 268 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 IGHV4-34P06331 123 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 GNA15P30679 374 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 SLC8A1P32418 973 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 ACADSBP45954 432 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 GRIA4P48058 902 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 PSMD8P48556 350 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 RPL34P49207 117 aaKnown RBP11.87□□□□□ -0.51
NEK3-204ENST00000552973 STK19P49842 368 aaPredicted RBP11.87□□□□□ -0.51
NEK3-204ENST00000552973 GALCP54803 685 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 PAK1Q13153 545 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 CST6Q15828 149 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 ARHGAP44Q17R89 818 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 NCEH1Q6PIU2 408 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 C19orf48Q6RUI8 117 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 CIR1Q86X95 450 aaPredicted RBP11.87□□□□□ -0.51
NEK3-204ENST00000552973 PROSER1Q86XN7 944 aa11.87□□□□□ -0.51
NEK3-204ENST00000552973 ELOA2Q8IYF1 753 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms