RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 F5H5T6 163 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 H0Y626 953 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 ARHGAP33O14559 1287 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 HSF2BPO75031 334 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 IGLV3-19P01714 112 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 GLI1P08151 1106 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 SYPP08247 313 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 CSRP1P21291 193 aaKnown RBP16.9■□□□□ 0.3
VPS29-207ENST00000549970 ST8SIA6P61647 398 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 KCNMA1Q12791 1236 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 DRAP1Q14919 205 aaPredicted RBP16.9■□□□□ 0.3
VPS29-207ENST00000549970 PTPN20Q4JDL3 420 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 DPY19L2P1Q6NXN4 242 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 OLFML1Q6UWY5 402 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 C11orf57Q6ZUT1 292 aaPredicted RBP16.9■□□□□ 0.3
VPS29-207ENST00000549970 FAM71AQ8IYT1 594 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 ZCCHC9Q8N567 271 aaKnown RBP16.9■□□□□ 0.3
VPS29-207ENST00000549970 MINDY1Q8N5J2 469 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 CADM4Q8NFZ8 388 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 RNF34Q969K3 372 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 TTC17Q96AE7 1141 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 PDCL3Q9H2J4 239 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS29-207ENST00000549970 ASNSD1Q9NWL6 643 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 SUN2Q9UH99 717 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 SLC12A6Q9UHW9 1150 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 ANGPTL2Q9UKU9 493 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 CEP83Q9Y592 693 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 FHOD1Q9Y613 1164 aa16.9■□□□□ 0.3
VPS29-207ENST00000549970 FAM170AA1A519 330 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 KCNU1A8MYU2 1149 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 OPHN1O60890 802 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 ASLP04424 464 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 CEACAM1P13688 526 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 ABCB4P21439 1286 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 NUMBP49757 651 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 RPS14P62263 151 aaKnown RBP16.89■□□□□ 0.29
VPS29-207ENST00000549970 EIF4EBP2Q13542 120 aaPredicted RBP16.89■□□□□ 0.29
VPS29-207ENST00000549970 PITRM1Q5JRX3 1037 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 CLEC17AQ6ZS10 378 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 CIR1Q86X95 450 aaPredicted RBP16.89■□□□□ 0.29
VPS29-207ENST00000549970 DNASE2BQ8WZ79 361 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 SNX19Q92543 992 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 MYO19Q96H55 970 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 FBRSQ9HAH7 460 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 KIAA1522Q9P206 1035 aaPredicted RBP16.89■□□□□ 0.29
VPS29-207ENST00000549970 NFE2L3Q9Y4A8 694 aa16.89■□□□□ 0.29
VPS29-207ENST00000549970 CACNA1EQ15878 2313 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 METTL12A8MUP2 240 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 DAB1O75553 588 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 MOCS3O95396 460 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 DNTTP04053 509 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 SLC2A3P11169 496 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 CCR1P32246 355 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 ACSL1P33121 698 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 CTSOP43234 321 aaPredicted RBP16.88■□□□□ 0.29
VPS29-207ENST00000549970 SNX16P57768 344 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 BPIFB4P59827 614 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 SLC6A3Q01959 620 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 NME3Q13232 169 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 TCP11X2Q5H9J9 407 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 KLHDC7AQ5VTJ3 777 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 ZNF776Q68DI1 518 aaPredicted RBP16.88■□□□□ 0.29
VPS29-207ENST00000549970 SMYD5Q6GMV2 418 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 DHX40Q8IX18 779 aaKnown RBP16.88■□□□□ 0.29
VPS29-207ENST00000549970 MRGPRX3Q96LB0 322 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 PRMT1Q99873 361 aaKnown RBP16.88■□□□□ 0.29
VPS29-207ENST00000549970 SLC32A1Q9H598 525 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 TAB2Q9NYJ8 693 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 EIF2B4Q9UI10 523 aaKnown RBP16.88■□□□□ 0.29
VPS29-207ENST00000549970 ERVW-1Q9UQF0 538 aa16.88■□□□□ 0.29
VPS29-207ENST00000549970 A0A1B0GTW7 788 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 SIN3BO75182 1162 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 CYP11B1P15538 503 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 EEF1GP26641 437 aaKnown RBP16.87■□□□□ 0.29
VPS29-207ENST00000549970 ZBTB16Q05516 673 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 FOXC1Q12948 553 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 GRIK2Q13002 908 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 SEMA3BQ13214 749 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 HNRNPA1L2Q32P51 320 aaKnown RBP16.87■□□□□ 0.29
VPS29-207ENST00000549970 TTC31Q49AM3 519 aaPredicted RBP16.87■□□□□ 0.29
VPS29-207ENST00000549970 CT47A1Q5JQC4 288 aaPredicted RBP16.87■□□□□ 0.29
VPS29-207ENST00000549970 TAF3Q5VWG9 929 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 SLC26A9Q7LBE3 791 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 APCDD1Q8J025 514 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 CCAR2Q8N163 923 aaKnown RBP16.87■□□□□ 0.29
VPS29-207ENST00000549970 BTBD1Q9H0C5 482 aa16.87■□□□□ 0.29
VPS29-207ENST00000549970 C6orf106Q9H6K1 298 aaPredicted RBP16.87■□□□□ 0.29
VPS29-207ENST00000549970 PCNX2A6NKB5 2137 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 TTC34A8MYJ7 566 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 M0QYT0 321 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 BCAT2O15382 392 aaPredicted RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 SRPRAP08240 638 aaKnown RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 UCHL3P15374 230 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 PDGFRAP16234 1089 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 NOS2P35228 1153 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 GGCXP38435 758 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 RNASE9P60153 205 aaKnown RBP16.86■□□□□ 0.29
VPS29-207ENST00000549970 ECT2LQ008S8 904 aa16.86■□□□□ 0.29
VPS29-207ENST00000549970 CENPCQ03188 943 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms