RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 FYB1O15117 783 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 ORC4O43929 436 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 MBD4O95243 580 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 KAT7O95251 611 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 CD4P01730 458 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 CNPP09543 421 aaKnown RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 HNRNPA1P09651 372 aaKnown RBP eCLIP4.6□□□□□ -1.67
VPS29-205ENST00000548539 MYCLP12524 364 aaPredicted RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 APEHP13798 732 aaKnown RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 DRD4P21917 467 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 FOXL2P58012 376 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 GAB1Q13480 694 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 SIM2Q14190 667 aaPredicted RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 DCTN1Q14203 1278 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 TBRG1Q3YBR2 411 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 TSTD2Q5T7W7 516 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 ATG16L1Q676U5 607 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 WDR93Q6P2C0 686 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 KYAT3Q6YP21 454 aaKnown RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 RSRC2Q7L4I2 434 aaKnown RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 SFTPA1Q8IWL2 248 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 GLMPQ8WWB7 406 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 SKA1Q96BD8 255 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 RRP36Q96EU6 259 aaKnown RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 HS6ST2Q96MM7 605 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 SNX18Q96RF0 628 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 PIGSQ96S52 555 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 THAP7Q9BT49 309 aaPredicted RBP4.6□□□□□ -1.67
VPS29-205ENST00000548539 CLPBQ9H078 707 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 RXFP3Q9NSD7 469 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 SLC13A4Q9UKG4 626 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 ARHGAP26Q9UNA1 814 aa4.6□□□□□ -1.67
VPS29-205ENST00000548539 CCDC151A5D8V7 595 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 WIPF3A6NGB9 483 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 GRM8O00222 908 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 SEPT4O43236 478 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 IGKV2-30P06310 120 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 LYL1P12980 280 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 ACP5P13686 325 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 PCP4P48539 62 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 MCM2P49736 904 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 AGTR2P50052 363 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 NR1H2P55055 460 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 WDR5P61964 334 aaKnown RBP4.59□□□□□ -1.67
VPS29-205ENST00000548539 MPP1Q00013 466 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 TDGQ13569 410 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 MFSD13AQ14CX5 517 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 KLHL22Q53GT1 634 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 AARS2Q5JTZ9 985 aaKnown RBP4.59□□□□□ -1.67
VPS29-205ENST00000548539 CRELD2Q6UXH1 353 aaPredicted RBP4.59□□□□□ -1.67
VPS29-205ENST00000548539 RINLQ6ZS11 566 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 BBS12Q6ZW61 710 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 ANKRD44Q8N8A2 993 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 TERB1Q8NA31 727 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 SPATA3Q8NHX4 192 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 SLC2A12Q8TD20 617 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 AKAP1Q92667 903 aaKnown RBP eCLIP4.59□□□□□ -1.67
VPS29-205ENST00000548539 ADGRE3Q9BY15 652 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 ZHX3Q9H4I2 956 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 PDE11AQ9HCR9 933 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 TLR8Q9NR97 1041 aaKnown RBP4.59□□□□□ -1.67
VPS29-205ENST00000548539 TMLHEQ9NVH6 421 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 PI4KBQ9UBF8 816 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 FZD4Q9ULV1 537 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 HSF4Q9ULV5 492 aa4.59□□□□□ -1.67
VPS29-205ENST00000548539 CNTNAP2Q9UHC6 1331 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 MANSC4A6NHS7 340 aaPredicted RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 PEX12O00623 359 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 ZNF213O14771 459 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 ALDOAP04075 364 aaKnown RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 SLC3A2P08195 630 aaKnown RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 CHN1P15882 459 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 MATN1P21941 496 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 SLC8A1P32418 973 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 ELF1P32519 619 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 PTGER1P34995 402 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 KRT9P35527 623 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 DDIT3P35638 169 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 VPS41P49754 854 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 CFHR3Q02985 330 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 TLE3Q04726 772 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 MAPRE1Q15691 268 aaKnown RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 FAM153CQ494X1 144 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 AWAT1Q58HT5 328 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 SLC9C2Q5TAH2 1124 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 WDR78Q5VTH9 848 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 FAM180BQ6P0A1 224 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 MTHFD1LQ6UB35 978 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 SLC29A4Q7RTT9 530 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 BCDIN3DQ7Z5W3 292 aaKnown RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 TCP11L2Q8N4U5 519 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 PTGR2Q8N8N7 351 aaPredicted RBP4.58□□□□□ -1.68
VPS29-205ENST00000548539 HASPINQ8TF76 798 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 DPF1Q92782 380 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 KCNJ9Q92806 393 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 FCRL4Q96PJ5 515 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 ASIC5Q9NY37 505 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 TFCP2L1Q9NZI6 479 aa4.58□□□□□ -1.68
VPS29-205ENST00000548539 B3GNT3Q9Y2A9 372 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms