RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 KLHL8Q9P2G9 620 aaPredicted RBP19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 PSAT1Q9Y617 370 aa19.03■□□□□ 0.64
PRPF40B-208ENST00000548436 POMCP01189 267 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 CNTFP26441 200 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 CD52P31358 61 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 HCAR3P49019 387 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 SMAD1Q15797 465 aaKnown RBP19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 WLSQ5T9L3 541 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 CES3Q6UWW8 571 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 PACS1Q6VY07 963 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 E2F7Q96AV8 911 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 AGAP3Q96P47 875 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 RAB3IPQ96QF0 476 aaPredicted RBP19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 ZNF395Q9H8N7 513 aaPredicted RBP19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 PADI3Q9ULW8 664 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 NLRC5Q86WI3 1866 aa19.02■□□□□ 0.64
PRPF40B-208ENST00000548436 COL4A4P53420 1690 aaPredicted RBP19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 CCDC195A0A1B0GUA6 201 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 GPR182O15218 404 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 PCSK1P29120 753 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 SERPINB3P29508 390 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 BRCC3P46736 316 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 PPIDQ08752 370 aaKnown RBP19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 CHI3L2Q15782 390 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 PREPLQ4J6C6 727 aaPredicted RBP19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 CCNJLQ8IV13 435 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 NUDCD3Q8IVD9 361 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 STKLD1Q8NE28 680 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 OR52K1Q8NGK4 314 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 TRIB2Q92519 343 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 SKA1Q96BD8 255 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 PRR11Q96HE9 360 aaPredicted RBP19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 WDCPQ9H6R7 721 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 SAR1AQ9NR31 198 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 FBXO6Q9NRD1 293 aaPredicted RBP19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 TMLHEQ9NVH6 421 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 MTO1Q9Y2Z2 717 aaKnown RBP19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 L3MBTL1Q9Y468 752 aa19.02■□□□□ 0.63
PRPF40B-208ENST00000548436 FAM237BA0A1B0GVD1 139 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 USP12O75317 370 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 ALDOAP04075 364 aaKnown RBP19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 MYL2P10916 166 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 BDNFP23560 247 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 TMPRSS15P98073 1019 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 ARL13BQ3SXY8 428 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 TEX44Q53QW1 395 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 FAM171BQ6P995 826 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 CD300LGQ6UXG3 332 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 PDZD4Q76G19 769 aaPredicted RBP19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 TBC1D10AQ9BXI6 508 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 ARHGAP39Q9C0H5 1083 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 TKTL2Q9H0I9 626 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 UPF3AQ9H1J1 476 aaKnown RBP19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 XPNPEP3Q9NQH7 507 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 RAD54BQ9Y620 910 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 TRAFD1O14545 582 aaPredicted RBP19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 ZBTB24O43167 697 aaPredicted RBP19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 B3GAT3O94766 335 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 BPGMP07738 259 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 ODC1P11926 461 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 THPOP40225 353 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 CXCR3P49682 368 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 RGMBQ6NW40 437 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 TRIM42Q8IWZ5 723 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 HASPINQ8TF76 798 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 CDKL2Q92772 493 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 C7orf26Q96N11 449 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 FCRL3Q96P31 734 aaPredicted RBP19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 NAT9Q9BTE0 207 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 RRN3Q9NYV6 651 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 OR12D3Q9UGF7 316 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 GABRQQ9UN88 632 aa19.01■□□□□ 0.63
PRPF40B-208ENST00000548436 TPP1O14773 563 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 DNAJC6O75061 913 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 F9P00740 461 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 ERVK-10P10266 1014 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 CD68P34810 354 aaPredicted RBP19■□□□□ 0.63
PRPF40B-208ENST00000548436 OCRLQ01968 901 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 TRIM32Q13049 653 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 HSF5Q4G112 596 aaPredicted RBP19■□□□□ 0.63
PRPF40B-208ENST00000548436 ATG16L1Q676U5 607 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 PM20D1Q6GTS8 502 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 RPAINQ86UA6 219 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 SAPCD2Q86UD0 394 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 TMEM209Q96SK2 561 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 ACBD6Q9BR61 282 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 C20orf27Q9GZN8 174 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 ARL8BQ9NVJ2 186 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 LNPEPQ9UIQ6 1025 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 PATJQ8NI35 1801 aa19■□□□□ 0.63
PRPF40B-208ENST00000548436 NCAM2O15394 837 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 ZNF623O75123 536 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 LRIG2O94898 1065 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 AP2A1O95782 977 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 GSRP00390 522 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 EPHB2P29323 1055 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 RASSF2P50749 326 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 ZBTB17Q13105 803 aa18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 PDE1CQ14123 709 aaPredicted RBP18.99■□□□□ 0.63
PRPF40B-208ENST00000548436 INTS6LQ5JSJ4 861 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms