RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 VCPIP1Q96JH7 1222 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 C1orf74Q96LT6 269 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 WDCPQ9H6R7 721 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 METTL5Q9NRN9 209 aaKnown RBP12.27□□□□□ -0.45
YBX3-217ENST00000546164 COX16Q9P0S2 106 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 STIM2Q9P246 746 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 NCDNQ9UBB6 729 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 GMEB2Q9UKD1 530 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 HS3ST4Q9Y661 456 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 SPTBN4Q9H254 2564 aa12.27□□□□□ -0.45
YBX3-217ENST00000546164 SPAG17Q6Q759 2223 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 DMXL1Q9Y485 3027 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 A0A1B0GVM2 712 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 FAM170AA1A519 330 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 TCAF2A6NFQ2 919 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 WASH3PC4AMC7 463 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 I6L893 689 aaPredicted RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 LRP3O75074 770 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 ADCY5O95622 1261 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 ASLP04424 464 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 ATP5BP06576 529 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 KRT3P12035 628 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 GABRG2P18507 467 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 PTPN9P43378 593 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 OXCT1P55809 520 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 AUHQ13825 339 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 BYSLQ13895 437 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 STARD3Q14849 445 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 PTPRNQ16849 979 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 MAP7D1Q3KQU3 841 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 FUT11Q495W5 492 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 PLK5Q496M5 336 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 FSCBQ5H9T9 825 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 SFMBT2Q5VUG0 894 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 ACAD10Q6JQN1 1059 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 METTL3Q86U44 580 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 KBTBD6Q86V97 674 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 ZNF683Q8IZ20 524 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 CCAR2Q8N163 923 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 CARNMT1Q8N4J0 409 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 FAM160A2Q8N612 972 aaPredicted RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 GPR161Q8N6U8 529 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 EMC1Q8N766 993 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 KDM1BQ8NB78 822 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 HMGB4Q8WW32 186 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 RXFP2Q8WXD0 754 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 SORCS1Q8WY21 1168 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 CENPIQ92674 756 aaPredicted RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 SYN2Q92777 582 aaPredicted RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 CFAP57Q96MR6 1250 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 TPSD1Q9BZJ3 242 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 TKTL2Q9H0I9 626 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 TMEM245Q9H330 911 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 TSPY26PQ9H489 355 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 ANLNQ9NQW6 1124 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 SEPT11Q9NVA2 429 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 KIAA1522Q9P206 1035 aaPredicted RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 BCCIPQ9P287 314 aaKnown RBP eCLIP12.26□□□□□ -0.45
YBX3-217ENST00000546164 INTS6Q9UL03 887 aaKnown RBP12.26□□□□□ -0.45
YBX3-217ENST00000546164 PLA2G4CQ9UP65 541 aa12.26□□□□□ -0.45
YBX3-217ENST00000546164 SIGLEC16A6NMB1 481 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 H0Y626 953 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 ZBTB24O43167 697 aaPredicted RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 ZNF217O75362 1048 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 GZMAP12544 262 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 PDGFRAP16234 1089 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 POLR2EP19388 210 aaKnown RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 NDUFV2P19404 249 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 TNFAIP3P21580 790 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 TGM1P22735 817 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 PRKCHP24723 683 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 SDC4P31431 198 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 RFC1P35251 1148 aaPredicted RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 PLK1P53350 603 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 ATXN1P54253 815 aaKnown RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 SLC12A1Q13621 1099 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 LPAL2Q16609 132 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 PLEKHG6Q3KR16 790 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 CCDC14Q49A88 953 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 PPP1R15BQ5SWA1 713 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 CXorf57Q6NSI4 855 aaKnown RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 SERPINA13PQ6UXR4 307 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 STRADAQ7RTN6 431 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 ZNF571Q7Z3V5 609 aaPredicted RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 MCOLN2Q8IZK6 566 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 DCLK2Q8N568 766 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 JOSD2Q8TAC2 188 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 IGSF8Q969P0 613 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 SPACA7Q96KW9 195 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 MRGPRX1Q96LB2 322 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 RPRD1AQ96P16 312 aaPredicted RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 HAPLN3Q96S86 360 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 SELENOOQ9BVL4 669 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 DUSP15Q9H1R2 295 aaPredicted RBP12.25□□□□□ -0.45
YBX3-217ENST00000546164 HAUS4Q9H6D7 363 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 IFNKQ9P0W0 207 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 VANGL2Q9ULK5 521 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 CAPN11Q9UMQ6 739 aa12.25□□□□□ -0.45
YBX3-217ENST00000546164 PCDHGA5Q9Y5G8 931 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms