RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	HEBP1	Q9NRV9	189 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	DNAJC17	Q9NVM6	304 aa	Known RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	MARK1	Q9P0L2	795 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	PPARGC1A	Q9UBK2	798 aa	Known RBP	10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	MUTYH	Q9UIF7	546 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	DUSP12	Q9UNI6	340 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	PCDHA3	Q9Y5H8	950 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	PIAS3	Q9Y6X2	628 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	PATJ	Q8NI35	1801 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	PRUNE2	Q8WUY3	3088 aa		10.47	□□□□□ -0.73
CPSF7-221	ENST00000543545	SPTBN5	Q9NRC6	3674 aa	Known RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545		A0A1B0GVM2	712 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	TCAF2	A6NFQ2	919 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	OTOL1	A6NHN0	477 aa	Predicted RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	ARNTL	O00327	626 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	STK25	O00506	426 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	HOXC11	O43248	304 aa	Predicted RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CLDN11	O75508	207 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CNTN5	O94779	1100 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	PENK	P01210	267 aa	Predicted RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CD48	P09326	243 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	RHOQ	P17081	205 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	AMPD1	P23109	780 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	OR1E1	P30953	314 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	HTR7	P34969	479 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CTNNA1	P35221	906 aa	Known RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	SLC6A11	P48066	632 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	MARCKSL1	P49006	195 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	IRAK1	P51617	712 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	NRG1	Q02297	640 aa	Predicted RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	MMRN1	Q13201	1228 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	LLGL1	Q15334	1064 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	ALF	Q53S48	1182 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	MPP7	Q5T2T1	576 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	MEI1	Q5TIA1	1274 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	FYB2	Q5VWT5	728 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	KAZN	Q674X7	775 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	GRAMD4	Q6IC98	578 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CHST9	Q7L1S5	443 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZNF354C	Q86Y25	554 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	RFX6	Q8HWS3	928 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	UBALD2	Q8IYN6	164 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	KATNAL2	Q8IYT4	538 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	ZNF683	Q8IZ20	524 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	EXD1	Q8NHP7	514 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	UBE2Q2	Q8WVN8	375 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CD101	Q93033	1021 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	RBM41	Q96IZ5	413 aa	Known RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CSPG4P5	Q96PW8	444 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CD320	Q9NPF0	282 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	TRPV5	Q9NQA5	729 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	SLC2A4RG	Q9NR83	387 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	KCND1	Q9NSA2	647 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	DONSON	Q9NYP3	566 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CWC15	Q9P013	229 aa	Known RBP	10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	DEC1	Q9P2X7	70 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	DNAI1	Q9UI46	699 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	CA14	Q9ULX7	337 aa		10.46	□□□□□ -0.73
CPSF7-221	ENST00000543545	GREB1	Q4ZG55	1949 aa		10.46	□□□□□ -0.74
CPSF7-221	ENST00000543545	REV3L	O60673	3130 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	C2orf16	Q68DN1	1984 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	IGLV3-10	A0A075B6K4	115 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	TBC1D3B	A6NDS4	549 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	SPECC1L-ADORA2A	F8WAN1	911 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	GFRA2	O00451	464 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	KCNK3	O14649	394 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	ENC1	O14682	589 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	FGF10	O15520	208 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	LUC7L3	O95232	432 aa	Known RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	RHOC	P08134	193 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	ERCC2	P18074	760 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	HOXD9	P28356	352 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	HCAR3	P49019	387 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	DGKG	P49619	791 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	ARSE	P51690	589 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	KDSR	Q06136	332 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	SEMA3B	Q13214	749 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZNF211	Q13398	564 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	DPYSL3	Q14195	570 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	MLF2	Q15773	248 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	C5orf22	Q49AR2	442 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	PREPL	Q4J6C6	727 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	ANKRD20A8P	Q5CZ79	823 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	C6orf118	Q5T5N4	469 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	CCDC181	Q5TID7	509 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	MANEAL	Q5VSG8	457 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	MFSD7	Q6UXD7	560 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	SPOCD1	Q6ZMY3	1216 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	NUDT18	Q6ZVK8	323 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	RALGPS2	Q86X27	583 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZNF557	Q8N988	423 aa	Predicted RBP	10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	HES6	Q96HZ4	224 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	PSMB7	Q99436	277 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	P2RY13	Q9BPV8	354 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	ZNF670	Q9BS34	389 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	SPON2	Q9BUD6	331 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	HEMGN	Q9BXL5	484 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	MUC3B	Q9H195	1237 aa		10.45	□□□□□ -0.74
CPSF7-221	ENST00000543545	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms