RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 IGSF8Q969P0 613 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 TTC17Q96AE7 1141 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 PABPC3Q9H361 631 aaKnown RBP16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 OSGEPQ9NPF4 335 aa16.06■□□□□ 0.16
CLSTN3-213ENST00000541953 COL5A1P20908 1838 aaPredicted RBP16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 URB1O60287 2271 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 A0A1W2PP55 124 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 TTC34A8MYJ7 566 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 STX10O60499 249 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 LTFP02788 710 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 CD44P16070 742 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 POLR2EP19388 210 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 METAP1P53582 386 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 GALCP54803 685 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 TBX4P57082 545 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 ZNF445P59923 1031 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 PITX1P78337 314 aaPredicted RBP16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 HNRNPA1L2Q32P51 320 aaKnown RBP16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 C9orf64Q5T6V5 341 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 KIAA0895LQ68EN5 471 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 NCEH1Q6PIU2 408 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 ARHGEF19Q8IW93 802 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 FMR1NBQ8N0W7 255 aaPredicted RBP16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 AADATQ8N5Z0 425 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 LMO3Q8TAP4 145 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 LRIG1Q96JA1 1093 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 CDC6Q99741 560 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 MIS12Q9H081 205 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 SGK2Q9HBY8 427 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 NAALADL1Q9UQQ1 740 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 PCDHB4Q9Y5E5 795 aa16.05■□□□□ 0.16
CLSTN3-213ENST00000541953 DOCK9Q9BZ29 2069 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 PLK4O00444 970 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 PCDHGA12O60330 932 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 ATP5BP06576 529 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 VAV1P15498 845 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 GRK6P43250 576 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 FMO5P49326 533 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 STK19P49842 368 aaPredicted RBP16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 ZBTB16Q05516 673 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 DNAJC3Q13217 504 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 TEAD4Q15561 434 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 SMAD1Q15797 465 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 CST6Q15828 149 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 TTC31Q49AM3 519 aaPredicted RBP16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 PITRM1Q5JRX3 1037 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 ZNF658Q5TYW1 1059 aaPredicted RBP16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 SYPL2Q5VXT5 272 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 TAC4Q86UU9 113 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 MMAAQ8IVH4 418 aaKnown RBP16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 APCDD1Q8J025 514 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 CARNMT1Q8N4J0 409 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 FIBINQ8TAL6 211 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 SLC39A13Q96H72 371 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 NEUROG2Q9H2A3 272 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 CAAP1Q9H8G2 361 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 FBXL12Q9NXK8 326 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 ARMCX3Q9UH62 379 aaPredicted RBP16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 SLCO3A1Q9UIG8 710 aa16.04■□□□□ 0.16
CLSTN3-213ENST00000541953 A0A1B0GTQ1 180 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 A0A1W2PPC4 97 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 TNFSF14O43557 240 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 MOCS2O96007 188 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 PAEPP09466 180 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 PPP2CBP62714 309 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 PPP2CAP67775 309 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 FKBP3Q00688 224 aaKnown RBP16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 E2F5Q15329 346 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 COBLL1Q53SF7 1204 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 DCAF6Q58WW2 860 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 MS4A13Q5J8X5 152 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 MPP7Q5T2T1 576 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 NUGGCQ68CJ6 796 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 ISM2Q6H9L7 571 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 RRAGAQ7L523 313 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 CIR1Q86X95 450 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 PPM1KQ8N3J5 372 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 HJURPQ8NCD3 748 aaPredicted RBP16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 IRGQQ8WZA9 623 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 KREMEN1Q96MU8 473 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 FAM129BQ96TA1 746 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 FBRSQ9HAH7 460 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 DKK4Q9UBT3 224 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 TJP2Q9UDY2 1190 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 CYTH4Q9UIA0 394 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 ERVW-1Q9UQF0 538 aa16.03■□□□□ 0.16
CLSTN3-213ENST00000541953 MYLKQ15746 1914 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 A0A1W2PR77 199 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 PAPSS1O43252 624 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 RNASEH2AO75792 299 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 TBXAS1P24557 533 aaPredicted RBP16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 PSMD8P48556 350 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 SLC11A2P49281 568 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 YWHAEP62258 255 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 CNGA2Q16280 664 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 DENND1BQ6P3S1 775 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 USP30Q70CQ3 517 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 ADAT2Q7Z6V5 191 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 SCUBE3Q8IX30 993 aa16.02■□□□□ 0.16
CLSTN3-213ENST00000541953 ENGASEQ8NFI3 743 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms