RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 TRPV2Q9Y5S1 764 aa10.24□□□□□ -0.77
TRAF1-202ENST00000540010 SDR42E2A6NKP2 422 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 GLRA3O75311 464 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 KRT36O76013 467 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CLPTM1O96005 669 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ALDH1A1P00352 501 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 NCAM1P13591 858 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CDH5P33151 784 aaPredicted RBP10.23□□□□□ -0.77
TRAF1-202ENST00000540010 PRKCZQ05513 592 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 IRF5Q13568 498 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CYLC2Q14093 348 aaPredicted RBP10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CYP1B1Q16678 543 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ANO4Q32M45 955 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 WASHC2DQ5SRD0 308 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 KIAA1841Q6NSI8 718 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CLEC4FQ8N1N0 589 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ZCCHC9Q8N567 271 aaKnown RBP10.23□□□□□ -0.77
TRAF1-202ENST00000540010 INPP5DQ92835 1189 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ZIC5Q96T25 663 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 MAGEB5Q9BZ81 275 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CYTH4Q9UIA0 394 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 PLXNA1Q9UIW2 1896 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 GOLGA8TH3BQL2 631 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 KCNK1O00180 336 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 IMPG1Q17R60 797 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 TRMT5Q32P41 509 aaKnown RBP10.23□□□□□ -0.77
TRAF1-202ENST00000540010 N4BP2L1Q5TBK1 243 aaPredicted RBP10.23□□□□□ -0.77
TRAF1-202ENST00000540010 LRRC38Q5VT99 294 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 LCLAT1Q6UWP7 414 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 POLNQ7Z5Q5 900 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 SCUBE3Q8IX30 993 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ADGRF2Q8IZF7 708 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ART4Q93070 314 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ZFP42Q96MM3 310 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CNPY3Q9BT09 278 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 C12orf65Q9H3J6 166 aaKnown RBP10.23□□□□□ -0.77
TRAF1-202ENST00000540010 AFF4Q9UHB7 1163 aaKnown RBP10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ST3GAL5Q9UNP4 418 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 USP12O75317 370 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 SUPT7LO94864 414 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CCDC130P13994 396 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CPA3P15088 417 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ELNP15502 786 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 GPD2P43304 727 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 UGP2Q16851 508 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 EML3Q32P44 896 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 TXNRD3NBQ6F5E7 133 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 FAM183BPQ6ZVS7 135 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 STRA8Q7Z7C7 330 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 ZNF786Q8N393 782 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 EFCAB3Q8N7B9 438 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 CNDP1Q96KN2 507 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 SOX13Q9UN79 622 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 TLL2Q9Y6L7 1015 aa10.23□□□□□ -0.77
TRAF1-202ENST00000540010 TMEM88BA6NKF7 163 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 LRRC37A2A6NM11 1700 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 ECHS1P30084 290 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 MIPP30301 263 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 FITM2Q8N6M3 262 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 C12orf50Q8NA57 414 aaPredicted RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 DIS3LQ8TF46 1054 aaKnown RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 TRIB2Q92519 343 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 BEGAINQ9BUH8 593 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 CYB561D2O14569 222 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 HMBSP08397 361 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 INCA1Q0VD86 236 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 TBL3Q12788 808 aaKnown RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 PDAP1Q13442 181 aaKnown RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 GAD1Q99259 594 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 LPIN3Q9BQK8 851 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 FRMD8Q9BZ67 464 aaPredicted RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 SLC38A7Q9NVC3 462 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 DDIT4Q9NX09 232 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 CNTN3Q9P232 1028 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 HAS3O00219 553 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 LRCH4O75427 683 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 PRKAR2AP13861 404 aaKnown RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 TPH1P17752 444 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 ACAT1P24752 427 aaKnown RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 RBL1P28749 1068 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 MLH1P40692 756 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 ARHGDIAP52565 204 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 CRADDP78560 199 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 ZBTB17Q13105 803 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 XRCC4Q13426 336 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 C15orf59Q2T9L4 293 aaPredicted RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 FAM228AQ86W67 206 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 UNC93AQ86WB7 457 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 PPHLN1Q8NEY8 458 aaKnown RBP10.22□□□□□ -0.77
TRAF1-202ENST00000540010 USP6NLQ92738 828 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 LPPQ93052 612 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 HERPUD2Q9BSE4 406 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 DPEP3Q9H4B8 488 aa10.22□□□□□ -0.77
TRAF1-202ENST00000540010 SEPT4O43236 478 aa10.21□□□□□ -0.77
TRAF1-202ENST00000540010 ZMPSTE24O75844 475 aa10.21□□□□□ -0.77
TRAF1-202ENST00000540010 SLC25A3Q00325 362 aa10.21□□□□□ -0.77
TRAF1-202ENST00000540010 LAMB3Q13751 1172 aa10.21□□□□□ -0.77
TRAF1-202ENST00000540010 SIX1Q15475 284 aaPredicted RBP10.21□□□□□ -0.77
TRAF1-202ENST00000540010 SLC45A4Q5BKX6 768 aa10.21□□□□□ -0.77
TRAF1-202ENST00000540010 PDPK2PQ6A1A2 396 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms